PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN21125.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C2H2

Protein Properties

Length: 258aa MW: 29715.9 Da PI: 8.1663

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN21125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	1.8e-05	9	34	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp dC+++F+ + n++rH + H PIN21125.1 9 FECPveDCKRRFTIQGNMTRHVKEfH 34 89********************9988 PP
2	zf-C2H2	17.2	1.4e-05	48	72	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F+ s L++H +H PIN21125.1 48 YVCSehGCGKVFKYLSKLHKHEDSH 72 8999***************9888 PP
3	zf-C2H2	18.8	4.5e-06	139	163	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C+ +Fs+ snL++Hi+ H PIN21125.1 139 KCSveGCSLTFSTASNLNQHIKAvH 163 789999***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MLQHQGKLFE CPVEDCKRRF TIQGNMTRHV KEFHGESDSA NVKHPKEYVC SEHGCGKVFK 60 YLSKLHKHED SHVKLESVEA FCAEPGCMKY FTNEQCLKEH IWSCHQHVIC DKCGTKQLKK 120 NIKRHIRMHE AGVSSERIKC SVEGCSLTFS TASNLNQHIK AVHLELKPFT CSIPGCNMKF 180 AFKHVRDNHE KSGCHVYTVG DFVESDEQFR SRPRGGRKRK CPTIETLMRK RVVPPSESDL 240 DVDEVHDHLS WLHSAESE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	220	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	1e-103	C2H2 family protein