PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN21900.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10451 Da    PI: 10.5218
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN21900.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.37.3e-322575151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fs++g+lyey++
  PIN21900.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRLYEYAN 75
                79***********************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    
MEFKSEQSRE MSPQRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEIA  60
LIVFSTRGRL YEYANNSTIV AVPFSAKSFW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-42MIKC_MADS family protein