PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN22069.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 237aa    MW: 25869.3 Da    PI: 6.9735
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN22069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.21.2e-284107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C++dC l p++     p++q++++ +++k++G++ +++l++a+p++ r+++++sl+ eA+ r+ +PvyG+vg++ +++++ +q+++e+
  PIN22069.1   4 SCNGCRVLRKGCSQDCSLKPCLqwiksPQSQANATLFLAKFYGRAGLINLIDAAPTHLRPEVFRSLLHEACGRIINPVYGSVGLMYSGNWRRCQAAVEA 102
                 6*************************************************************************************************9 PP

      DUF260  95 allke 99 
                 +l+++
  PIN22069.1 103 VLQGA 107
                 98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MRMSCNGCRV LRKGCSQDCS LKPCLQWIKS PQSQANATLF LAKFYGRAGL INLIDAAPTH  60
LRPEVFRSLL HEACGRIINP VYGSVGLMYS GNWRRCQAAV EAVLQGAPLI KQVTRDDDHD  120
DSSTAAQLQA CDIRHLSAGG VRSGNRFKRS AKSQVDSVGE AEFLIESETK FTITGWDCGE  180
DELKRAPSHD SFSVETVESA LVNPDEKPVW GIKPEPTGLE LTLGLNSVAA QTYLSTV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-69LBD family protein