PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN22440.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family ARF
Protein Properties Length: 884aa    MW: 97861.2 Da    PI: 6.6278
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN22440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.11.4e-22128229199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d+++++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +l+
  PIN22440.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHNNEWKFRHIFRGQPKRHLLTTGWSIFVSTKRLVAGDSVLFI--WNEKNQLL 223
                 99*****************************9777666.49************************************************..8889999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  PIN22440.1 224 LGIRRA 229
                 **9986 PP
2Auxin_resp1156.8e-38254336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rWpnS+Wrs+k
  PIN22440.1 254 AAHAASTNSRFTIFYNPRASPSEFVIPLAKFVKAVYhTRVSVGMRFRMLFETEESSIRRYMGTITGIGDLDP-RWPNSHWRSVK 336
                 79*********************************9789*********************************.********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    
MKLSGGLNQL SPEGGEQNCL NSELWHACAG PLVSLPTIGS HVVYFPQGHS EQVAASTNKE  60
IDAQIPNHPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEV SFLPPDFGAP  120
SRQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS LQPPAQELIA RDLHNNEWKF  180
RHIFRGQPKR HLLTTGWSIF VSTKRLVAGD SVLFIWNEKN QLLLGIRRAI RPQTVMPSSV  240
LSSDSMHLGL LAAAAHAAST NSRFTIFYNP RASPSEFVIP LAKFVKAVYH TRVSVGMRFR  300
MLFETEESSI RRYMGTITGI GDLDPRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWQPG LSSFTGMKND DMGLHSSLMW LYGGVEDRGM QYSNFYGTGT  420
TPWMQPRLDP SVLGMQNDVY QAMAAAALHE MRAAHESKHM LPSMMQFQQA QALGSLPCAP  480
VHPPLIQQSQ SSAPFLQSLH EASPQMHVNF IHQKLHHQNS FDNIQLPQHD QQRQFTDTRH  540
VSAIAPVPSR LSSNSQDHSQ SITSMHQNFS EPNTNPVSGN INSPLHSLVG SVTHSEASDL  600
LSMPRSSNLL SSNGWPTKRV AIDPLLSQGI LPDIDHLGQS NANVTQNATS LPPFPGRDCL  660
IDQDGSNDPQ NHFLFGVNID SPSLLMQNGI SNLKGVGSDS DNTTVGFGSS SYLSSPGADC  720
SLKPTVTSSS FIEETGLLQP KENAGHANLS NTTFVKVYKL GSFGRSLDIT KFSSYHELRS  780
ELAQMFGLEG QLEDPLRSGW QLVFVDREND VLLLGDDPWP EFVNNVWCIK ILSPQEVQDM  840
GKRGLELLSS VPVQRQNGSC DAYASRHEAR NINPVIPSVG TLDF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein