PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN22464.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 158aa MW: 18207.8 Da PI: 8.6751

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN22464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7e-40	12	110	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C++dC ++pyf +++ kfa vhk+FGasnv+k+l+++pe++r++a++slvyeAe+r+rdP+yG++g i +lq+++ +l+++l l+++ PIN22464.1 12 SCAACKFLKRRCSPDCQFRPYFRSDEYDKFAKVHKVFGASNVIKILNQVPEDQRPAAVNSLVYEAEVRLRDPIYGCIGAIASLQHKMVKLQHDLILARA 110 6*******************************************************************************************9988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MKNNQEPRSS SSCAACKFLK RRCSPDCQFR PYFRSDEYDK FAKVHKVFGA SNVIKILNQV 60 PEDQRPAAVN SLVYEAEVRL RDPIYGCIGA IASLQHKMVK LQHDLILARA RLASYVDKCH 120 SFSFLDDGFQ RYGEFNGVVE SHDRNLVFLD QFGRFCFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	6e-57	LBD family protein