PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN22806.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LBD

Protein Properties

Length: 214aa MW: 23107.4 Da PI: 6.9671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN22806.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.1	3.3e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+ G++ ++++++a+pe++r+++++sl++eA r+ +Pv+G+vg++++++++++q+++e+ PIN22806.1 2 SCNGCRVLRKGCSETCILRPCLqwiesPEAQGNATVFVAKFCGRAGLMSFISAVPENQRPALFQSLLFEAAGRTVNPVNGSVGLLWTGNWHVCQAAVET 100 6***********************************************************************************************999 PP DUF260 95 all 97 +l+ PIN22806.1 101 VLR 103 876 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MSCNGCRVLR KGCSETCILR PCLQWIESPE AQGNATVFVA KFCGRAGLMS FISAVPENQR 60 PALFQSLLFE AAGRTVNPVN GSVGLLWTGN WHVCQAAVET VLRGGALKPI PELLGGASEP 120 DDASECTDMF KLQDPGLSSG PKVQKRRRFA DEPATVMQLA DLDLSLTPGF QGKKSSPFPE 180 KRRLGSPSMN SEESVTTTCG DQQTTEIKLL NLFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	147	PKVQKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-83	LBD family protein