PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23236.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 486aa    MW: 55859.5 Da    PI: 6.4335
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23236.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.41.1e-751194824374
        GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl....fsevsPilkfshlta 98 
                  Ll++Ae +s ++  +a++lL r+   as +g p++Rl+++f e L+ +++    +  k+++ +et  ++++++++ lk+      +   i +++h+t 
  PIN23236.1 119 CLLTAAEKFSLQQYDQAEELLIRV-LSASRAGHPVERLVTCFGEDLRMKIYL---QKGKTVREQETFCMDVEKAVMNLKVpirmCEQRLAISQVTHFTG 213
                 599******************998.4699**********************9...44455555555555566666666554444888889********* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  q+Il++v+++er+H +D +i+ G  W+ L++aLa+R+  +   l+iT++      sk+++eetge L++fAe++++pfef+  v +++++++ +++++
  PIN23236.1 214 IQMILDSVSSAERIHFVDVGIKLGSYWIILMHALANREnVPLKLLKITAICT----SKDMMEETGELLSSFAETMNLPFEFKR-VYSEMNEIKKDMFDL 307
                 *************************************94455699*******....9**************************.7999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 + +E+l+V l++ l +l +++ +le     +++ +k+l+P+++vv+e ea+ n+++F +rf eal  +sa+fdslea l r++e r++ E+++ ++ i+
  PIN23236.1 308 EADEVLVVYLQFCLISLSASPPKLEA----LIREIKNLNPNMMVVSEIEANVNGSTFIDRFHEALFLCSAVFDSLEACLERDNEYRKSAEEVYYQEIIR 402
                 ******************99999999....********************************************************************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +vv +eg+e++++  +   Wr+ + ++G  +++ls++   qa+lll++ + + g ++  +++++++gW++ ++ svSaW+
  PIN23236.1 403 KVVETEGNESFKQFLKIDFWRDYFARFGIVEMELSKSSIVQASLLLKESDcWSGCTLSMNRKCMLIGWNGMAIRSVSAWK 482
                 *******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    
MASHSSQTAQ KDNHPSIINF LIEDKKEAPI NLQASFELLN KYRNQVKRFR NDEPCNPSPL  60
KEKPNTIRSG SQGSNSNHRL LSAESIMRIA RNRILQPKSQ KPVEYLSPEN EMYLNLALCL  120
LTAAEKFSLQ QYDQAEELLI RVLSASRAGH PVERLVTCFG EDLRMKIYLQ KGKTVREQET  180
FCMDVEKAVM NLKVPIRMCE QRLAISQVTH FTGIQMILDS VSSAERIHFV DVGIKLGSYW  240
IILMHALANR ENVPLKLLKI TAICTSKDMM EETGELLSSF AETMNLPFEF KRVYSEMNEI  300
KKDMFDLEAD EVLVVYLQFC LISLSASPPK LEALIREIKN LNPNMMVVSE IEANVNGSTF  360
IDRFHEALFL CSAVFDSLEA CLERDNEYRK SAEEVYYQEI IRKVVETEGN ESFKQFLKID  420
FWRDYFARFG IVEMELSKSS IVQASLLLKE SDCWSGCTLS MNRKCMLIGW NGMAIRSVSA  480
WKFRHD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-44GRAS family protein