PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23337.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8236.69 Da    PI: 10.4003
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23337.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +i++   rqvtfskRr+g+ KKA+ELS+LCd+evaviifs+ g+ly yss
  PIN23337.1 10 KIDDIAARQVTFSKRRQGLVKKAHELSILCDVEVAVIIFSPAGRLYQYSS 59
                5889999*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    
MGREKIKIRK IDDIAARQVT FSKRRQGLVK KAHELSILCD VEVAVIIFSP AGRLYQYSST  60
KYGAFFLPSS ISC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.29e-19MIKC_MADS family protein