PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23631.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19051.3 Da    PI: 4.671
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23631.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.97.2e-101055247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                 ie+k +r++tf+kRr+g+ KK    +   d+e+a++ +s+ g+ +
  PIN23631.1 10 LIEDKPKRHTTFTKRRKGLEKKTRVFCNKFDVEAAILTVSEAGNAF 55
                59***************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MVRRRIEIEL IEDKPKRHTT FTKRRKGLEK KTRVFCNKFD VEAAILTVSE AGNAFGYGHP  60
SVDMVLDRYL DRAPEENNGV EERLDGEVED EVEEAAAPLT EVEKRIVDGI ENGKWEVAIG  120
DLGLEELGEL EAEMRKIKSN VVARAREIAA SEKNVSDGGS SAGNSSSGSF RS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-14M-type_MADS family protein