PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23648.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24521.3 Da    PI: 8.4802
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.7e-201355547
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                  s  q t+ kRr g++KKA ELS+LCdaevavi+fsstg++ 
  PIN23648.1 13 RGSSSQSTYVKRRLGLFKKARELSTLCDAEVAVILFSSTGEMN 55
                5577899**********************************97 PP
2K-box462.2e-16841691299
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +++ ++q ++ + + + + L++   + lG++L+ ++l+eL+ Leq+L+++l  i+++K+++lle+i + +++e  + +e ++L++++e
  PIN23648.1  84 KEQPNMQVDVPRQEMQKHDLKKL--QSLGKNLTGMDLQELHALEQKLNEGLLCIKERKEQILLEEIARCRMQEMHAMQEIENLSRQVE 169
                 45667888888888888888876..99*********************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGRNKIEIKK MERGSSSQST YVKRRLGLFK KARELSTLCD AEVAVILFSS TGEMNQQCSG  60
DLMALIRKFK NSLGPNNTPA DEPKEQPNMQ VDVPRQEMQK HDLKKLQSLG KNLTGMDLQE  120
LHALEQKLNE GLLCIKERKE QILLEEIARC RMQEMHAMQE IENLSRQVEG FRSFFKSAYP  180
MPVPVSYPPR MTSNVEPTEK DSNTTLCLGL PFSGGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-41MIKC_MADS family protein