PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23649.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18910.7 Da    PI: 8.8284
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23649.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.94.6e-171150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                i n++ r+ +f kR++g++KK +ELS+LC+++++ +++s+
  PIN23649.1 11 ITNDTERKASFKKRKKGLFKKVSELSTLCGVDACAVVYSE 50
                89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MARKKVTLRY ITNDTERKAS FKKRKKGLFK KVSELSTLCG VDACAVVYSE YDSDPVVWPS  60
RSVAQEVLSR FKALPEVDRN RKMVNQEGLT RQWIKKAENQ LLLVQKENKW KELENFMFRC  120
LAGTASMEEF DQRDAVEMDS VIENALKSVD SRMEELQRDH LE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVTLRYITNDTERKASFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-39M-type_MADS family protein