PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN23767.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

CO-like

Protein Properties

Length: 428aa MW: 46422.1 Da PI: 7.0389

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN23767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.5	1e-06	3	41	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ ++e +++l+C+ + lC +C ++ H+ H PIN23767.1 3 ACEYCGERPAILYCRADTAKLCLSCDQHVHSAnalskkH 41 6***************************99544555555 PP
2	zf-B_box	22	3.3e-07	44	89	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++ + C +++ lC++C H + H+++p+ PIN23767.1 44 SQICDNCAAGPAAFRCATDGLVLCQECDWDAHGScavsaaHDRCPV 89 579****99**************99955999999998885 PP
3	CCT	64.3	3.5e-22	380	423	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++ PIN23767.1 380 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAT 423 7789**************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MVACEYCGER PAILYCRADT AKLCLSCDQH VHSANALSKK HLRSQICDNC AAGPAAFRCA 60 TDGLVLCQEC DWDAHGSCAV SAAHDRCPVE GFTGCPSAFD LASAWGLEIE EKKTAACEWG 120 GLLEELMVPN ASSVIYSGCG GELVKKKKSP SCGKQKQVIL KQLLELLTDG GGGGGGGGGD 180 GGGEDVGPAT PSGGAWRQEN LCGQYEEQEQ KQHLQQNGGF TSLLMMHTSA NPKEEGNMLW 240 NTTSCDHGAQ IWDFNLGRLR GHEECSTLEQ EYGGSDMLYT VKSYGELLKE ATLPKRANCS 300 IAHEDINMIP FNSASNNQTP SQGPATSESN NLPGSRPTSE PKCYGGSKDF QFMDQSILMK 360 NEHATAAITK ADMELLAKNR GNAMQRYKEK KKTRRYDKHI RYESRKARAD TRKRVKGRFV 420 KATEAPSG

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MVACEYCGER PAILYCRADT AKLCLSCDQH VHSANALSKK HLRSQICDNC AAGPAAFRCA  60
TDGLVLCQEC DWDAHGSCAV SAAHDRCPVE GFTGCPSAFD LASAWGLEIE EKKTAACEWG  120
GLLEELMVPN ASSVIYSGCG GELVKKKKSP SCGKQKQVIL KQLLELLTDG GGGGGGGGGD  180
GGGEDVGPAT PSGGAWRQEN LCGQYEEQEQ KQHLQQNGGF TSLLMMHTSA NPKEEGNMLW  240
NTTSCDHGAQ IWDFNLGRLR GHEECSTLEQ EYGGSDMLYT VKSYGELLKE ATLPKRANCS  300
IAHEDINMIP FNSASNNQTP SQGPATSESN NLPGSRPTSE PKCYGGSKDF QFMDQSILMK  360
NEHATAAITK ADMELLAKNR GNAMQRYKEK KKTRRYDKHI RYESRKARAD TRKRVKGRFV  420
KATEAPSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	5e-96	CO-like family protein