PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23788.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family LBD
Protein Properties Length: 205aa    MW: 21948.7 Da    PI: 8.002
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.6e-40171171100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+k+C++apyf ++q +++fa+vh++FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG+vg+i++lqqq+ +l+aela+++
  PIN23788.1  17 PCGACKFLRRKCVKGCIFAPYFDSDQgTAHFAAVHRVFGASNASKLLLRIPPHRRLDAVITLCYEALARVRDPVYGCVGHIFTLQQQVVNLQAELAYTQ 115
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  PIN23788.1 116 AR 117
                 76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MSNGSGGSGG GGGGGGPCGA CKFLRRKCVK GCIFAPYFDS DQGTAHFAAV HRVFGASNAS  60
KLLLRIPPHR RLDAVITLCY EALARVRDPV YGCVGHIFTL QQQVVNLQAE LAYTQARIST  120
LQHGPSLPHQ PPSLSSSNPR SSSNFACNST VQTAPFDASL SEETSTEIVS LCNSVDQELE  180
DGDLQSLARE YVSRYFPGVR FRPPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.11e-67LBD family protein