PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN23884.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

Trihelix

Protein Properties

Length: 351aa MW: 39140.5 Da PI: 9.6079

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN23884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.1	2.7e-14	56	143	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Li+a e+ +l+rg+lk+++W++v++ + +++ ++++pk qCk++++ ++k+yk +k ++ + s++++fd+l+ PIN23884.1 56 CWSEGATAVLIDAWGERYLELSRGNLKQKHWKDVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKVEKVKIASG--GGPSKWRFFDKLD 143 7***********************************866677776654449***********9999997..67778****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MEEDDEIQSH SSPNPNGRIA VTVAAAPPSN SNSLTLALPI QPQKTPGSSG GGREDCWSEG 60 ATAVLIDAWG ERYLELSRGN LKQKHWKDVA DIVSSREDYT KTPKTDIQCK NRIDTVKKKY 120 KVEKVKIASG GGPSKWRFFD KLDQLIGPTA KINSTPPPTD ANNNMHQRVP LGIPVGVRSA 180 SVSQPQQQVQ QKLNRKRLPV DSEDESEQEN SADSSDGLPP QSYKRPRISM ENQMLNNASA 240 ARNGMINKKS DGGNKESSWG NSMRELTRAI LKFGEAYEQA ETAKLQQLVE LEKQRMKFTK 300 ELELQRMQYF MKTQLELSQL KSRRPGNNNN HHGINNNNDA NNNNNNSDSS N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MEEDDEIQSH SSPNPNGRIA VTVAAAPPSN SNSLTLALPI QPQKTPGSSG GGREDCWSEG  60
ATAVLIDAWG ERYLELSRGN LKQKHWKDVA DIVSSREDYT KTPKTDIQCK NRIDTVKKKY  120
KVEKVKIASG GGPSKWRFFD KLDQLIGPTA KINSTPPPTD ANNNMHQRVP LGIPVGVRSA  180
SVSQPQQQVQ QKLNRKRLPV DSEDESEQEN SADSSDGLPP QSYKRPRISM ENQMLNNASA  240
ARNGMINKKS DGGNKESSWG NSMRELTRAI LKFGEAYEQA ETAKLQQLVE LEKQRMKFTK  300
ELELQRMQYF MKTQLELSQL KSRRPGNNNN HHGINNNNDA NNNNNNSDSS N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	9e-62	Trihelix family protein