PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24286.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB

Protein Properties

Length: 407aa MW: 45765.9 Da PI: 6.6631

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl PIN24286.1 13 RGLWSPEEDEKLIRHITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ PIN24286.1 66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLIRHITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL 120 DPNTHNLLSS SSSPSSCPSR ISIIAKNISN NTSCNYIATA KSNKSQLRET TAFTVDTKTT 180 MTTTSSFSAV AADPMDDMKK RKKKTVTDVP INIIPHEAHT NSNYMMTSAT LTNIDQNPST 240 TGNSTDCHNY SMLSSALQEF ARTCSRETSS STPMFSSPNY NSVFGILNID DSINWGSAPL 300 MEQQYSQEQQ PQQEQEQQQQ IICDDDQPQL VYKDEDVNHH HPLVMNYSIS SSGDQLQGGG 360 NINNTFDARS SATDFDFHDQ FVDSELMPPP LYNCTLNSMD DQLAWDC

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MGHHCCSKQK VKRGLWSPEE DEKLIRHITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLSS SSSPSSCPSR ISIIAKNISN NTSCNYIATA KSNKSQLRET TAFTVDTKTT  180
MTTTSSFSAV AADPMDDMKK RKKKTVTDVP INIIPHEAHT NSNYMMTSAT LTNIDQNPST  240
TGNSTDCHNY SMLSSALQEF ARTCSRETSS STPMFSSPNY NSVFGILNID DSINWGSAPL  300
MEQQYSQEQQ PQQEQEQQQQ IICDDDQPQL VYKDEDVNHH HPLVMNYSIS SSGDQLQGGG  360
NINNTFDARS SATDFDFHDQ FVDSELMPPP LYNCTLNSMD DQLAWDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	203	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	6e-83	MYB family protein