PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24304.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 527aa MW: 58251.2 Da PI: 5.2279

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.7	1.7e-12	201	224	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF+H+p PIN24304.1 201 EDCAYYMKTGSCKFGLNCKFNHPP 224 89********************97 PP
2	zf-CCCH	27.6	5e-09	247	270	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C++++ +G C+yG Ck++Hg PIN24304.1 247 QTECKYYLTSGGCRYGKDCKYSHG 270 568********************9 PP
3	zf-CCCH	37.3	4.6e-12	292	316	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ PIN24304.1 292 GEKECHYYMRNGSCKYGSNCRFHHP 316 7899********************9 PP
4	zf-CCCH	29.2	1.6e-09	428	454	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+ ++CkF+H++ PIN24304.1 428 PGEPECSFFLKTGDCKFKSNCKFHHPK 454 5799*********************96 PP
5	zf-CCCH	34.1	4.5e-11	477	501	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++r+G+CkyG+ Ck+ H+ PIN24304.1 477 DEPICTHYHRFGICKYGPACKYDHP 501 789*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MSESRASSTS DKPPSEKLGL GSLVSVTAPF DPMTTDTAIQ PSGLSQNTPD AGSDPMPDGA 60 AEGVQKEVFP TYDEAEVANS IERELLQLSI VHAEIDAALE RLEAEVEGKD VRTVKNENLD 120 EEKNGKDGES AEEDNDGREE GNDIKMVRND DHEDPVEEGN DYCDVQDDIE GQSGELVTNL 180 GRHNHSHDRK RINYPMRPDA EDCAYYMKTG SCKFGLNCKF NHPPRRKSQS TKEKGKQREE 240 NSEKAGQTEC KYYLTSGGCR YGKDCKYSHG LDKSSASHDL ELNFLGLPIR PGEKECHYYM 300 RNGSCKYGSN CRFHHPDPKT VMGGGSPSGY DNGGSLPSQL ISSSSISSWS SPRAFTDTSP 360 FVPVVFPPTQ GAPTPSPEWN GYQAAAYPTS ERSLPTPPAF AINNLPIETN FPVQHQRDMV 420 LEEYPERPGE PECSFFLKTG DCKFKSNCKF HHPKNRNSKA KAKAFALNDK GLPLRPDEPI 480 CTHYHRFGIC KYGPACKYDH PSKFAVSPPS FDEPPYSKIV GGAEQDR

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MSESRASSTS DKPPSEKLGL GSLVSVTAPF DPMTTDTAIQ PSGLSQNTPD AGSDPMPDGA  60
AEGVQKEVFP TYDEAEVANS IERELLQLSI VHAEIDAALE RLEAEVEGKD VRTVKNENLD  120
EEKNGKDGES AEEDNDGREE GNDIKMVRND DHEDPVEEGN DYCDVQDDIE GQSGELVTNL  180
GRHNHSHDRK RINYPMRPDA EDCAYYMKTG SCKFGLNCKF NHPPRRKSQS TKEKGKQREE  240
NSEKAGQTEC KYYLTSGGCR YGKDCKYSHG LDKSSASHDL ELNFLGLPIR PGEKECHYYM  300
RNGSCKYGSN CRFHHPDPKT VMGGGSPSGY DNGGSLPSQL ISSSSISSWS SPRAFTDTSP  360
FVPVVFPPTQ GAPTPSPEWN GYQAAAYPTS ERSLPTPPAF AINNLPIETN FPVQHQRDMV  420
LEEYPERPGE PECSFFLKTG DCKFKSNCKF HHPKNRNSKA KAKAFALNDK GLPLRPDEPI  480
CTHYHRFGIC KYGPACKYDH PSKFAVSPPS FDEPPYSKIV GGAEQDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-104	C3H family protein