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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PIN24501.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 166aa MW: 19498.2 Da PI: 9.6528 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 54.3 | 2.2e-17 | 69 | 122 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
PIN24501.1 69 KKRRLNIEQVKALERSFELGNKFEPERKMQLARALGLQPRQIAIWFQNRRARWK 122
4557899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 129.1 | 1.8e-41 | 68 | 159 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqvk+LE+sFe +k eperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+++alk++n++L++++++L+++++
PIN24501.1 68 EKKRRLNIEQVKALERSFELGNKFEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFEALKADNDALKSQNKNLKNQVR 159
69**************************************************************************************9986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 166 aa Download sequence |
MAFVPVAAGE SMFRNHEDTH FPSSSPQDFH GVPEFLMRRS MSFSGLERAE DLQQDDDMSD 60 DGSQMLGEKK RRLNIEQVKA LERSFELGNK FEPERKMQLA RALGLQPRQI AIWFQNRRAR 120 WKTKQLEKDY DVLKRQFEAL KADNDALKSQ NKNLKNQVRI NFFCMI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 117 | 125 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G69780.1 | 5e-51 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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