PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24552.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

ARF

Protein Properties

Length: 716aa MW: 79768.3 Da PI: 6.964

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.9	1.3e-11	210	258	48	98
EEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 48 vkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ +++++r++lt+GW+ Fv++++L +gD++vF + ++++l+v+v+r PIN24552.1 210 FNCLSSGQPRRHLLTTGWSTFVSSKRLAAGDSFVFL--RGDNGQLRVGVRR 258 5566688999************************..3478889*998 PP
2	Auxin_resp	102.4	5.8e-34	284	363	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F+v ++k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d+++ +W++S WrsLk PIN24552.1 284 ASHAITTQTLFVVYYKPRT--SQFIVGLNKYLDAMQHGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSS-QWTHSTWRSLK 363 789*************6..9******************************************888.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MAHVDGLIRG GSHETGLGSD ELYKELWKAC AGPLVDVPCN GERVYYFAQG HMEQLEASTN 60 QELNLQIPRF NLPSKILCRV VDIRLLAEQE TDEVYTQITL QPEPDQTEPT SLDPSPPDPP 120 KQTVHSFCKI LTASDTSTHG GFSVLRKHAN ECLPPLDMTQ PTPTQDLVAK DLHGYEWRFK 180 HIFRGKSVLQ NSYMKTIILS HVMSNVYNPF NCLSSGQPRR HLLTTGWSTF VSSKRLAAGD 240 SFVFLRGDNG QLRVGVRRLA RQQSSMPPSV ISSQSMHLGV LATASHAITT QTLFVVYYKP 300 RTSQFIVGLN KYLDAMQHGF SVGMRFKMRF EGEDSPERRF TGTIVGVGDF SSQWTHSTWR 360 SLKVQWDEPA TILRPDRVSP WEIEPFVASG SADVSQPAIK IKRPRPLDLP HTETNTASTA 420 SPLWFSKSTT PRELSHLTST NDVQSGENQV FWPPKQKDPG GLWSSVSHVN GSLSLFRESA 480 DDNKNVSVRS SCPDYQSPVS SRTSNCLDHV EGIKKVETAP ACRLFGIDLR NNSHKIPPAG 540 KEASLPCPNI VPDRDAPVKR SEADGKQSVD LLNSSKESKH VPLEVSLYDM HGKQSLVSSS 600 RTRIKVQMQG IAVGRGVDLT AFGGYDDLTI ELENMFDLKG ELCPRNKWEV VYTDNEGDMM 660 LVGDDPWPEF CKMARKICIY SSEEVKKMSP RCKLLLSSQE CEGTILSLES EPKSEA

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MAHVDGLIRG GSHETGLGSD ELYKELWKAC AGPLVDVPCN GERVYYFAQG HMEQLEASTN  60
QELNLQIPRF NLPSKILCRV VDIRLLAEQE TDEVYTQITL QPEPDQTEPT SLDPSPPDPP  120
KQTVHSFCKI LTASDTSTHG GFSVLRKHAN ECLPPLDMTQ PTPTQDLVAK DLHGYEWRFK  180
HIFRGKSVLQ NSYMKTIILS HVMSNVYNPF NCLSSGQPRR HLLTTGWSTF VSSKRLAAGD  240
SFVFLRGDNG QLRVGVRRLA RQQSSMPPSV ISSQSMHLGV LATASHAITT QTLFVVYYKP  300
RTSQFIVGLN KYLDAMQHGF SVGMRFKMRF EGEDSPERRF TGTIVGVGDF SSQWTHSTWR  360
SLKVQWDEPA TILRPDRVSP WEIEPFVASG SADVSQPAIK IKRPRPLDLP HTETNTASTA  420
SPLWFSKSTT PRELSHLTST NDVQSGENQV FWPPKQKDPG GLWSSVSHVN GSLSLFRESA  480
DDNKNVSVRS SCPDYQSPVS SRTSNCLDHV EGIKKVETAP ACRLFGIDLR NNSHKIPPAG  540
KEASLPCPNI VPDRDAPVKR SEADGKQSVD LLNSSKESKH VPLEVSLYDM HGKQSLVSSS  600
RTRIKVQMQG IAVGRGVDLT AFGGYDDLTI ELENMFDLKG ELCPRNKWEV VYTDNEGDMM  660
LVGDDPWPEF CKMARKICIY SSEEVKKMSP RCKLLLSSQE CEGTILSLES EPKSEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	402	406	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61830.1	0.0	ARF family protein