PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24611.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

HD-ZIP

Protein Properties

Length: 297aa MW: 33664 Da PI: 4.3485

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	5.6e-19	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k PIN24611.1 65 KKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWK 118 566899***********************************************9 PP
2	HD-ZIP_I/II	127.4	6e-41	64	156	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLep+rKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++ dalk++ e+L++++e+L +e++e PIN24611.1 64 EKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANNDALKNKYESLQQDNESLLNEIQE 156 69**************************************************************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MPSMKRLNSG DSLGALMSIC PNSTVDVEEH NQENNPMYPR EFQTMLEGLD EESGCVEESA 60 QVSEKKRRLS VDQVKALEKN FEVENKLEPD RKVKLAQELG LQPRQVAVWF QNRRARWKTK 120 QLERDYGVLK ANNDALKNKY ESLQQDNESL LNEIQELKSK LNQDGKNESR VSVKEEPLLS 180 DSDEKGKLET ATDLNFENFN QVMGGDLKDG SSDSDTSAIS NEDNNSPTGA ISQQSPHEFL 240 ASSSMNISFL TESKASYQPH EFVKIEEHNF FGEESCTSFF SDEQAPTLNW CCADDWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	94	KKRRLSVDQVKALEKNFEVENKLEPDRKVK
2	113	121	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	9e-70	HD-ZIP family protein