PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN24818.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

LSD

Protein Properties

Length: 176aa MW: 18107 Da PI: 8.0823

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN24818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.6	1.7e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V PIN24818.1 7 CSGCRTVLLYPSGATNVCCAVCNMV 31 ***********************98 PP
2	zf-LSD1	39.4	9.8e-13	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV PIN24818.1 46 CGGCRTLLMQARGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	49	1e-15	87	111	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ PIN24818.1 87 CGNCHTMLMYPAGAPSVKCAICHFI 111 ***********************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence
MQSQLVCSGC RTVLLYPSGA TNVCCAVCNM VNAVPPAGME MAQLICGGCR TLLMQARGAT 60 SVRCSCCHTV NLVPAAPTPN NVAHVNCGNC HTMLMYPAGA PSVKCAICHF ITNVNMGDTR 120 VPIPVHRPGG NSTSASTPST STATANAQNQ TVVVQNPMTV DESGKLVSNV VVGVTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-50	LSD family protein