PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN25313.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

MYB_related

Protein Properties

Length: 698aa MW: 77163.7 Da PI: 8.6395

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN25313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.9e-08	599	648	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r ++T E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ PIN25313.1 599 RRPFTVAEVEALVQAVEKLGTGRWRDVKLRAFesaKHRTYVDLKDKWKTL 648 679*********************9888889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence
MVLQKRLDYG FNGYQVPPTP RAARSVRRRC LFKKKTDDHQ MCAFDLLATV AGKILLDGEN 60 PPLNTSSAKE QPTAVEDSIR EEEKEDDKPF EEKSCDRDCY ERNFMFAELV SEAPDPSLCS 120 NELAGTQNDV ISRPASGITT SDCSEKVGSA EQLVNDDCKL RLGIFTPSVD VESSVVRLSA 180 NCGSEDESRK SVKMDSANNT RNLSISNNKT SMCSSGHPEA WDTKPSALVC SVDSVKFPFL 240 KDHAPCGSFP INGDNVKLVT RDDDENSSEC TEPSTRNKAI KTPPQVGDHR FRKLIASKHC 300 NTTPNTKDDE RYADTERSNH LSRKNSFKSQ RSLRDYPIKK RKIYDCSSVS NSDEGVSSDR 360 ICKVSENSTN GGGLGSAPTP PRGTLAPTSA SRGHESFHSR NAPVKLKIKS FRVPELFIEM 420 PETATVGSLK RTVMEAVNAV LGGGLRVGIL LQGKKIRDDN KTLLQSGISQ NNKMDSLGFT 480 LEPCPSTAPI RLYPEDRPGQ QLLYDSPQPL ARYPPTPSIT QNGSQQGNPG TPPDLPGTSF 540 NNFIESDHDS APSPPGMSLQ RTTSESKALV PVPSTKQDAL AVIPLRKSKR SESAQRRIRR 600 PFTVAEVEAL VQAVEKLGTG RWRDVKLRAF ESAKHRTYVD LKDKWKTLVH TARISPQQRR 660 GEPVPQELLD RVLTAHAYWS QQQAKQQLKP QPETCRLL

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence

MVLQKRLDYG FNGYQVPPTP RAARSVRRRC LFKKKTDDHQ MCAFDLLATV AGKILLDGEN  60
PPLNTSSAKE QPTAVEDSIR EEEKEDDKPF EEKSCDRDCY ERNFMFAELV SEAPDPSLCS  120
NELAGTQNDV ISRPASGITT SDCSEKVGSA EQLVNDDCKL RLGIFTPSVD VESSVVRLSA  180
NCGSEDESRK SVKMDSANNT RNLSISNNKT SMCSSGHPEA WDTKPSALVC SVDSVKFPFL  240
KDHAPCGSFP INGDNVKLVT RDDDENSSEC TEPSTRNKAI KTPPQVGDHR FRKLIASKHC  300
NTTPNTKDDE RYADTERSNH LSRKNSFKSQ RSLRDYPIKK RKIYDCSSVS NSDEGVSSDR  360
ICKVSENSTN GGGLGSAPTP PRGTLAPTSA SRGHESFHSR NAPVKLKIKS FRVPELFIEM  420
PETATVGSLK RTVMEAVNAV LGGGLRVGIL LQGKKIRDDN KTLLQSGISQ NNKMDSLGFT  480
LEPCPSTAPI RLYPEDRPGQ QLLYDSPQPL ARYPPTPSIT QNGSQQGNPG TPPDLPGTSF  540
NNFIESDHDS APSPPGMSLQ RTTSESKALV PVPSTKQDAL AVIPLRKSKR SESAQRRIRR  600
PFTVAEVEAL VQAVEKLGTG RWRDVKLRAF ESAKHRTYVD LKDKWKTLVH TARISPQQRR  660
GEPVPQELLD RVLTAHAYWS QQQAKQQLKP QPETCRLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	342	LRDYPIKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-104	MYB_related family protein