PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN25968.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 563aa    MW: 62082.2 Da    PI: 4.8229
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN25968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.25.1e-1401965611374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++++la+al++++  la +++ +m+++a+yf+eALa+r++r    ly    p++ ++   ++ l+    f+e++P+lkf+h+taN
  PIN25968.1 196 LVHTLMACAEAVQQENFKLAEALVKNVGFLAVSQAGAMRKVATYFAEALARRIYR----LY----PTNPQDPAFTDLLQ--MHFYETCPYLKFAHFTAN 284
                 689****************************************************....55....33332222444444..45**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g++rvH+iDf+++qG+QWpaLlqaLa Rp+gpps+R+Tg+g+p++++++ l+e+g++LakfAe+++v+fe++ +va++l+dl+  ++++++
  PIN25968.1 285 QAILEAFAGKNRVHVIDFSMKQGMQWPALLQALALRPGGPPSFRLTGIGPPSNDNTDHLQEVGWKLAKFAETINVEFEYRGFVATSLADLNAAMFDIRE 383
                 *************************************************************************************************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.lpres....eerikvErellgr 292
                 gE++aVn++++lh+ll++++++e+    vL++v++l+P++++vveqea+hn++ Flerf+e+l+yys+lfdsle+  +++ +    ++++++++++lgr
  PIN25968.1 384 GETVAVNSIFELHQLLARPGAIEK----VLQVVRELKPEILTVVEQEANHNGNVFLERFTESLHYYSTLFDSLESCgAGNCDalvsDQDKVMSEVYLGR 478
                 ************************....*********************************************766233332566699*********** PP

        GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +i+nvvaceg +r+erhetl +Wr r+++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+++SaW+
  PIN25968.1 479 QICNVVACEGVDRIERHETLTQWRVRFGSAGFGPVHLGSNAYKQASMLLALFAgGDGYRVEENNGCLMLGWHTRTLIATSAWK 561
                 **********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    
MWSCEAEDAG VDELFAVLGY KVKSSDMAEV AQKIEQLEEV MGSVQQDGLS QLASETVHYN  60
PSDLSSWLES MISGLNPMPE FDSSSDPFLE SSTITTIDNG SSVNSRAQMV ADSDFGSDLI  120
SIPGKAIYPR TQPPAPPPQP QPQPQQQQQP PAKKPKTLSY LGNSVANLQS ERVFARPVES  180
TRSVVLVDSQ ENGIRLVHTL MACAEAVQQE NFKLAEALVK NVGFLAVSQA GAMRKVATYF  240
AEALARRIYR LYPTNPQDPA FTDLLQMHFY ETCPYLKFAH FTANQAILEA FAGKNRVHVI  300
DFSMKQGMQW PALLQALALR PGGPPSFRLT GIGPPSNDNT DHLQEVGWKL AKFAETINVE  360
FEYRGFVATS LADLNAAMFD IREGETVAVN SIFELHQLLA RPGAIEKVLQ VVRELKPEIL  420
TVVEQEANHN GNVFLERFTE SLHYYSTLFD SLESCGAGNC DALVSDQDKV MSEVYLGRQI  480
CNVVACEGVD RIERHETLTQ WRVRFGSAGF GPVHLGSNAY KQASMLLALF AGGDGYRVEE  540
NNGCLMLGWH TRTLIATSAW KLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein