PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN26444.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family GRAS
Protein Properties Length: 628aa    MW: 68838.6 Da    PI: 7.5494
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN26444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3503.9e-1072566283374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + L+++A avs+g+ e+a ++L+rl++  +p+g++ qRlaay++ AL++r++r    + +   +se       e++++++++++ sP++k+++++aN a
  PIN26444.1 256 QSLIDAAVAVSEGKPEAAGEILTRLQQVGNPRGTSEQRLAAYMVSALKSRVNR----IEHPAVVSELY---GREHTMSTQMLYDFSPCFKLGFMAANLA 347
                 78***************************************************....77666677776...89999*********************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                 Ilea++++  +++H++Dfdi+qG+Q++ Ll aLa++        g++ l iT++ + ++  +++l+ + erL+ +A+++gv+++f+v    ++++l+ e
  PIN26444.1 348 ILEATSEQgfDKIHVLDFDIGQGGQYVHLLYALAAKMkldnkpTGAAGLTITTFTNFATAGEDKLKVVYERLKALAHKIGVSLNFHV-RNLNINELSCE 445
                 *****99988************************98777765567889********9999**************************9.899******** PP

        GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                 +L+v+ +Eal+Vn++++l++l+desv++e+ rde+L+ vk lsPkv++vveqe+++n++++ +r+ ++ e+y+alfdsl+a+l+res++r+ +E+  lg
  PIN26444.1 446 KLEVQADEALVVNFAFELYKLPDESVTTENLRDELLRRVKALSPKVMTVVEQEMNTNTAPLIARVRDTYEHYAALFDSLDATLSRESQQRVGIEEG-LG 543
                 ************************************************************************************************.** PP

        GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 r+i n++ac g++r+er+e ++kWr+r+++aGF+p ++s+ +a++ ++ l+     + g++v+eesg +++gWk++ L+++SaWr
  PIN26444.1 544 RRIANAIACDGRNRVERCEVFGKWRARMSMAGFQPRAMSQPTAESLRSKLNSGTsgNPGFTVNEESGGICFGWKGKFLTVASAWR 628
                 *****************************************999999998865547899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    
MSSGFSGGAS DFFSAGRRST VMPTNTYNTN LNAQPQFSFR SPLSGILPDQ AAQIHRPDLI  60
GKRSLAEFQQ QTQQGLGFYL RNVKQRPNYQ HASPISPLSP VDFSPVPSIS SEVSSVSNSV  120
NSRYGLPILQ QQQPQPLSLS NRNFNNVSSR IPLPNLSQKN GFVNTGMNVS GPVSSLEVSP  180
DSEKNMMNHR LQELEKQLLG DEEDGENVSV VTNSEWSEAF QNLIVPTQKP ISPSPTSSSS  240
SCSSTSASPP LPCQKQSLID AAVAVSEGKP EAAGEILTRL QQVGNPRGTS EQRLAAYMVS  300
ALKSRVNRIE HPAVVSELYG REHTMSTQML YDFSPCFKLG FMAANLAILE ATSEQGFDKI  360
HVLDFDIGQG GQYVHLLYAL AAKMKLDNKP TGAAGLTITT FTNFATAGED KLKVVYERLK  420
ALAHKIGVSL NFHVRNLNIN ELSCEKLEVQ ADEALVVNFA FELYKLPDES VTTENLRDEL  480
LRRVKALSPK VMTVVEQEMN TNTAPLIARV RDTYEHYAAL FDSLDATLSR ESQQRVGIEE  540
GLGRRIANAI ACDGRNRVER CEVFGKWRAR MSMAGFQPRA MSQPTAESLR SKLNSGTSGN  600
PGFTVNEESG GICFGWKGKF LTVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-128GRAS family protein