PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PIN26522.1

Organism

Handroanthus impetiginosus

Taxonomic ID

429701

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus

Family

C3H

Protein Properties

Length: 331aa MW: 37069.1 Da PI: 7.6943

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PIN26522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.5e-12	194	219	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ PIN26522.1 194 YQPDICKDYKETGYCGYGDSCKFMHD 219 67789********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MQGDGADGGG AAANEGSTIC NFYRKPSKGK NIRKRTATEE GDGEDEDSKV ESSVVFNKKK 60 QATADNKLHF SSGPLKTSKE SEGERTKATV FEYESSKQIQ VHNDSRATAT LETETDFSRD 120 ARAIRERVLK QAEEALKGKN KSDGEEKVYK GLHGYTDYKA GFRREHTVAS EKAGGAHGPL 180 RASAHIRVSA RFDYQPDICK DYKETGYCGY GDSCKFMHDR GDYKSGWQLE KEWEEKEKAR 240 AKKMAMGLKD DDEGGAESSD EDDDNSLPFA CFICREPFVD PVVTKCKHYF CEHCALKHHA 300 RNKKCFVCNQ PTNGIFNTAF EIRKKMAADK K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-146	C3H family protein