PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA45640.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 212aa MW: 24506.2 Da PI: 5.553

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA45640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.3e-15	7	54	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +W+ Ede+l+++vkq G ++W ++a+ g+ R k+c++rw+++l PKA45640.1 7 KRPWSSAEDEKLIECVKQNGERNWPAVANFSGLSRDSKSCRLRWLNHL 54 579*******************************************97 PP
2	Myb_DNA-binding	46.1	1.1e-14	62	105	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+eE+ +++++ +G++ W++ ++++ gR+++++k++w+++l PKA45640.1 62 PFTPEEECTIIQLHSIYGNK-WSLMTKHLP-GRSDNEIKNYWNTWL 105 89****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MTSNTRKRPW SSAEDEKLIE CVKQNGERNW PAVANFSGLS RDSKSCRLRW LNHLSPRHNN 60 EPFTPEEECT IIQLHSIYGN KWSLMTKHLP GRSDNEIKNY WNTWLKRRSK ANLPLYPSEI 120 QSQLQNQTEL SPSTTVAINM IRASLEMPHA HPPPSWDTHE QDDLSVFFDT FDEFLSPNSI 180 LVDSNDFEQG AIDAYNTDLS STNHGEQLFN IF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	1e-43	MYB family protein