PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA45672.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 451aa MW: 48656.9 Da PI: 5.1306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA45672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	339	376	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L PKA45672.1 339 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 376 677888999*****998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MAEDFQAGNW WKASGGARSN DFDGSPAAAS ISSSAVLTDV RVGSAGGSFN WSASNEIAGA 60 NRPRDCEDLA AGAANLVDSG LQLSSFGLSN PSMDWSQTLL MNTGRGGDQS SFQAMLQQPQ 120 ELDPVVEPPR IPFKNMNQPF LLESGECSSS GNISGFQLAS SSPSSSYRCS SPMLQGLFDP 180 ADQTRSQQSL FDNQQMELKY SYQTQSNMGY RSVSSEMQGE EYSWDYKVFP QELFKGLSPK 240 QAQNITAMNQ LQFTNNTPFW NASTAAANEL LSTRPRIYAS AASSSPFDPI SSGSSSSSGI 300 NVVKSSEGAR EKKLGSGEPA LKKPRLESAP PPLPTFKVRK EKLGDRITAL QQLVSPFGKT 360 DTASVLHEAI EYIKFLHDQV SVLSTPYLKN GHPMQQQQKM SSDKSNDGEG PKLDLRSRGL 420 CLVPIASTYP VASETSADFW TPTSFGAGAY R

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MAEDFQAGNW WKASGGARSN DFDGSPAAAS ISSSAVLTDV RVGSAGGSFN WSASNEIAGA  60
NRPRDCEDLA AGAANLVDSG LQLSSFGLSN PSMDWSQTLL MNTGRGGDQS SFQAMLQQPQ  120
ELDPVVEPPR IPFKNMNQPF LLESGECSSS GNISGFQLAS SSPSSSYRCS SPMLQGLFDP  180
ADQTRSQQSL FDNQQMELKY SYQTQSNMGY RSVSSEMQGE EYSWDYKVFP QELFKGLSPK  240
QAQNITAMNQ LQFTNNTPFW NASTAAANEL LSTRPRIYAS AASSSPFDPI SSGSSSSSGI  300
NVVKSSEGAR EKKLGSGEPA LKKPRLESAP PPLPTFKVRK EKLGDRITAL QQLVSPFGKT  360
DTASVLHEAI EYIKFLHDQV SVLSTPYLKN GHPMQQQQKM SSDKSNDGEG PKLDLRSRGL  420
CLVPIASTYP VASETSADFW TPTSFGAGAY R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	5e-52	bHLH family protein