PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA45686.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 377aa MW: 42711.4 Da PI: 6.0071

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA45686.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.2e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+v+++G g+W+t ++ g+ R++k+c++rw +yl PKA45686.1 14 KGPWTAEEDQKLIDYVQKHGHGSWRTLPKNAGLARCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.3	3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ PKA45686.1 67 RGRFSFEEEEAIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MGRGPCCDKN GLKKGPWTAE EDQKLIDYVQ KHGHGSWRTL PKNAGLARCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSLLN PALLMSGITP APHDQLDVST LLGFDPIVNT ELLRFATNLF 180 QSQSQQNHIQ NPQLDNITSN PPPNFLNIQV QQTSASDADH HQSFVDSWKS FQSERHITST 240 IWQQEINESS NSSRLYSFSK NHDFEPADIA ATVINPGYHD DDQNVGELLE MPKNSAYESS 300 EYFQLPVPDN QDYRRITSVV STPASSPTLN NYSSSTHLQM NSCSSNNITD QDDKDSYCSN 360 SLINFHIPEL LDVSDFI

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MGRGPCCDKN GLKKGPWTAE EDQKLIDYVQ KHGHGSWRTL PKNAGLARCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSLLN PALLMSGITP APHDQLDVST LLGFDPIVNT ELLRFATNLF  180
QSQSQQNHIQ NPQLDNITSN PPPNFLNIQV QQTSASDADH HQSFVDSWKS FQSERHITST  240
IWQQEINESS NSSRLYSFSK NHDFEPADIA ATVINPGYHD DDQNVGELLE MPKNSAYESS  300
EYFQLPVPDN QDYRRITSVV STPASSPTLN NYSSSTHLQM NSCSSNNITD QDDKDSYCSN  360
SLINFHIPEL LDVSDFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-95	MYB family protein