PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA45870.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 319aa MW: 33780.5 Da PI: 5.6794

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA45870.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++ G g+W++ ++ g+ R++k+c++rw +yl PKA45870.1 14 KGPWTPEEDKILVDYIQSNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	51.8	1.8e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ G++ W+tIa+ ++ gRt++++k++w+++l PKA45870.1 67 RGPFTPEEQKSIIQLHGIVGNK-WSTIAAQLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MGRAPCCEKQ GLKKGPWTPE EDKILVDYIQ SNGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF TPEEQKSIIQ LHGIVGNKWS TIAAQLPGRT DNEIKNYWNT HLKKRLLRMG 120 INPDTFAPAS PSSSSAGAAA ATSACAGAAA TRHMAQWESA RLEAEARLSR ESLLFSSAAA 180 AAAASASGSS ATASADPSGD DLAGKPDSDF FLRIWNSEVG DSFRLPLSRP AGEMSSGSAP 240 AVAAKVEDGV APSASSVEGE VPSGPDSSSS NEMDENSDES YQLFLNFAGD DLGLFHGHLG 300 GISFFSGDLN DVSLDTAFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	9e-94	MYB family protein