PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA45975.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GRF

Protein Properties

Length: 366aa MW: 39953.9 Da PI: 7.9098

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA45975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.4	3.3e-25	79	123	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ PKA45975.1 79 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKHVEA 123 79****************************************996 PP
2	QLQ	59.9	7.3e-21	17	52	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+++L++Q+l++KyL+a+ PvP++L+++i++ PKA45975.1 17 PFTASQWEELEHQALIFKYLIAGIPVPSDLVLPIRR 52 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MNSATAIAGS GTGCRPPFTA SQWEELEHQA LIFKYLIAGI PVPSDLVLPI RRSYETMAAR 60 FYSHPALGYC SSYYGKKLDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM HRGRNRSRKH 120 VEAPQALPQS QSSSSTVTSI APSSAGSSGS GSGSGSSGAA AGGGSFHALP LDAVSAGHHH 180 SASSLGVASS SHIHPDPPSY GIGSAATKDF SKCRYLRGAK PDLDEYSFSE SSLSVRGLGM 240 DSPLDSSWRM MSTPSDSFSL FRDERESSIL DNNYFHNQPV QDLEQATFKN QHSFFQSDFN 300 SSEAPVKNVQ ALRPFFDEWP RTREQWLDLE EKSNRASFST TQLSISIPMA SSDFSTTSSR 360 SQNGSN

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MNSATAIAGS GTGCRPPFTA SQWEELEHQA LIFKYLIAGI PVPSDLVLPI RRSYETMAAR  60
FYSHPALGYC SSYYGKKLDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM HRGRNRSRKH  120
VEAPQALPQS QSSSSTVTSI APSSAGSSGS GSGSGSSGAA AGGGSFHALP LDAVSAGHHH  180
SASSLGVASS SHIHPDPPSY GIGSAATKDF SKCRYLRGAK PDLDEYSFSE SSLSVRGLGM  240
DSPLDSSWRM MSTPSDSFSL FRDERESSIL DNNYFHNQPV QDLEQATFKN QHSFFQSDFN  300
SSEAPVKNVQ ALRPFFDEWP RTREQWLDLE EKSNRASFST TQLSISIPMA SSDFSTTSSR  360
SQNGSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-48	GRF family protein