PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46096.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 451aa MW: 48828.7 Da PI: 8.2266

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46096.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	133	178	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G+++W++Iar ++ gR++k+c++rw + PKA46096.1 133 KGPWSPEEDAILGRLVAKFGPRNWSLIARGVP-GRSGKSCRLRWCNQ 178 79****************************.*********985 PP
2	Myb_DNA-binding	56.3	7.4e-18	185	229	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eEd++++ a++++G++ W+ Iar + gRt++ +k++w++ PKA46096.1 185 RKPFTEEEDQIIIAAHALHGNK-WAVIARLLD-GRTDNAIKNHWNST 229 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MVDGLTTDGS GHFGSTPDIS FSFNKKKKKK RTRLSGTVVV FPKLQLRASR RQPVGTLTRA 60 ALSLSMASEV QAMAVEASPP ADDSTASVPP HPLSSSPSAS VECIPEPSGL QAEGFGVASA 120 GKTAGASGED RVKGPWSPEE DAILGRLVAK FGPRNWSLIA RGVPGRSGKS CRLRWCNQLD 180 PHVKRKPFTE EEDQIIIAAH ALHGNKWAVI ARLLDGRTDN AIKNHWNSTL RRKCIGIEKP 240 KRANSAADED NSVDIVEKNK GSSEETQSFG DVKPFLTTME GRDVSSRDNL SHQPEERENA 300 VGYEFNDHTS TVHRPVARLS AFSPYNPGFR QPTSSLQPRS AQFDGLLFRS SSFGTSESKL 360 LESVLFCEQV PANCGHGCCG IQRRDCSRSS LLGPEFREFL EPAPISSLEL ASMTSELSNI 420 AWLKSGLQSG IYSSSHCHLN ATSSSCTADT F

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MVDGLTTDGS GHFGSTPDIS FSFNKKKKKK RTRLSGTVVV FPKLQLRASR RQPVGTLTRA  60
ALSLSMASEV QAMAVEASPP ADDSTASVPP HPLSSSPSAS VECIPEPSGL QAEGFGVASA  120
GKTAGASGED RVKGPWSPEE DAILGRLVAK FGPRNWSLIA RGVPGRSGKS CRLRWCNQLD  180
PHVKRKPFTE EEDQIIIAAH ALHGNKWAVI ARLLDGRTDN AIKNHWNSTL RRKCIGIEKP  240
KRANSAADED NSVDIVEKNK GSSEETQSFG DVKPFLTTME GRDVSSRDNL SHQPEERENA  300
VGYEFNDHTS TVHRPVARLS AFSPYNPGFR QPTSSLQPRS AQFDGLLFRS SSFGTSESKL  360
LESVLFCEQV PANCGHGCCG IQRRDCSRSS LLGPEFREFL EPAPISSLEL ASMTSELSNI  420
AWLKSGLQSG IYSSSHCHLN ATSSSCTADT F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	31	KKKKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	1e-83	MYB family protein