PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46453.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 367aa MW: 40145.9 Da PI: 7.8828

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46453.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.1	3.9e-41	119	196	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l++ak+yh+rhkvCe+hskap v+v g eqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk+++ PKA46453.1 119 RCQVEGCDKALADAKDYHKRHKVCEMHSKAPRVVVLGAEQRFCQQCSRFHAISEFDDAKRSCRRRLAGHNERRRKSSS 196 6**************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MENDGAAERG SDGGILQAWG FLDPSAADAI YAEETATASS SSYGSTSCAP FGDLVVVPGR 60 DHWFGHGAEK CSYRQQQQRH LTCLKLGKRQ YCGGCRGGER EVEGVMKRSS PATRSVVPRC 120 QVEGCDKALA DAKDYHKRHK VCEMHSKAPR VVVLGAEQRF CQQCSRFHAI SEFDDAKRSC 180 RRRLAGHNER RRKSSSESMR NTSLENAILI SSTFPYEASK SPGRALSLLS SKASPWTSNS 240 ELSSRSTAAL HDLIAENRAS LFARQVIPDR ICPQGSAPAS CSALSCDPQQ QQPPFQLPSH 300 QLGNGWINFQ DSSCDHVTLD LMQNPDSAVQ FHQAAGSSNR PRESEEECCE ILKSLGGTHV 360 VVKLPFI

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MENDGAAERG SDGGILQAWG FLDPSAADAI YAEETATASS SSYGSTSCAP FGDLVVVPGR  60
DHWFGHGAEK CSYRQQQQRH LTCLKLGKRQ YCGGCRGGER EVEGVMKRSS PATRSVVPRC  120
QVEGCDKALA DAKDYHKRHK VCEMHSKAPR VVVLGAEQRF CQQCSRFHAI SEFDDAKRSC  180
RRRLAGHNER RRKSSSESMR NTSLENAILI SSTFPYEASK SPGRALSLLS SKASPWTSNS  240
ELSSRSTAAL HDLIAENRAS LFARQVIPDR ICPQGSAPAS CSALSCDPQQ QQPPFQLPSH  300
QLGNGWINFQ DSSCDHVTLD LMQNPDSAVQ FHQAAGSSNR PRESEEECCE ILKSLGGTHV  360
VVKLPFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	1e-32	SBP family protein