PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46539.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 847aa MW: 91783 Da PI: 6.8081

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.1	1.2e-21	93	148	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF++n++p++++r eL+k+lgL++rqVk+WFqNrR+++k PKA46539.1 93 KKRYHRHTPQQIQELESLFKENPHPDEKQRLELSKRLGLETRQVKFWFQNRRTQMK 148 688999***********************************************999 PP
2	START	126.4	3.6e-40	294	499	1	185
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela++a++elvk+a+ + p+W++s+ e +n++ + q f++ ++ + ea r++++v+ ++ lve+l+d + +W +++ +a+t++ is PKA46539.1 294 ELALTAMDELVKMAQMGVPLWTSSPetgrETLNYEHYEQVFPRCNGlkpgnFVPEATRETTMVIINSLALVETLMDAA-RWADMFPgmiaRATTTDIIS 391 5899*******************99999999999999999988899999999********************.**************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177 g galqlm aelq+lsplvp R++ f+R+++ql +g w++vdvS+d +++p+ s + ++++lpSg+++e+++ng+sk + l++++ PKA46539.1 392 AGlggsrnGALQLMHAELQVLSPLVPiREVHFLRFCKQLADGAWAVVDVSIDGIRENPSpSGLSPKCRRLPSGCVVEDMPNGYSKRSLLIPSTLRSQSL 490 ******************************************************7666678*****************977776666666665 PP .HHHHHHHH CS START 178 .hwllrslv 185 +++++s+ PKA46539.1 491 aSSVFQSVS 499 566666665 PP
3	START	42.7	1.5e-14	546	589	163	206
EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +vtwveh+++++ +h+l+rsl++sg+a ga++w+atlqrqce+ PKA46539.1 546 QVTWVEHAEYDETAVHQLYRSLLRSGMALGAQRWLATLQRQCEC 589 69****************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence
MSFGGLYEGE LPFGSSAMAA GVRFGSAGLS LGLQSNLEGQ RDLGRLAAAG GGGVGDLDAL 60 CRNKEDENES RSGSDNVEGG SGDDLDQEHP RKKKRYHRHT PQQIQELESL FKENPHPDEK 120 QRLELSKRLG LETRQVKFWF QNRRTQMKTQ LERHENTILR QENEKLRAEN ITIRDAMRNP 180 ICSSCGGPAV LGEVSLEEQH LRIENARLKD ELDRVCAIAG KFLGKPISSI STPLPNSSLE 240 LAVGGNGFVF GSVAFSSVSD YVAAVGSSPF GTVITPSRSI PAMDRSLERS MLLELALTAM 300 DELVKMAQMG VPLWTSSPET GRETLNYEHY EQVFPRCNGL KPGNFVPEAT RETTMVIINS 360 LALVETLMDA ARWADMFPGM IARATTTDII SAGLGGSRNG ALQLMHAELQ VLSPLVPIRE 420 VHFLRFCKQL ADGAWAVVDV SIDGIRENPS PSGLSPKCRR LPSGCVVEDM PNGYSKRSLL 480 IPSTLRSQSL ASSVFQSVSH VVSPPSKRAV FVVFMRCRVP LYPCRRILLH HLLFVCCVTE 540 AFLFPQVTWV EHAEYDETAV HQLYRSLLRS GMALGAQRWL ATLQRQCECL AILMSSVPSR 600 DQTAISAAGR RSMLKLAQRM TDNFCAGVCA SSARKWSRLA NVGSVGEDVR VMSRQSVDDP 660 GEPPGVVLSA ATSVWLPVTP TRLFDFLRDE SLRSRWDILS NGGPMQEMAH IAKGQDHGNA 720 VSLLSASAVN ANQNGMLILQ ETCTDASGSL VVYAPVDVPA MQLVMNGGDS AYVALLPSGF 780 AVMPDGPAAL AGADGKIGGG SLLTVAFQIL VNSLPTAKLT VESVETVNNL ISCTVQKIRG 840 ALGCCES

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence

MSFGGLYEGE LPFGSSAMAA GVRFGSAGLS LGLQSNLEGQ RDLGRLAAAG GGGVGDLDAL  60
CRNKEDENES RSGSDNVEGG SGDDLDQEHP RKKKRYHRHT PQQIQELESL FKENPHPDEK  120
QRLELSKRLG LETRQVKFWF QNRRTQMKTQ LERHENTILR QENEKLRAEN ITIRDAMRNP  180
ICSSCGGPAV LGEVSLEEQH LRIENARLKD ELDRVCAIAG KFLGKPISSI STPLPNSSLE  240
LAVGGNGFVF GSVAFSSVSD YVAAVGSSPF GTVITPSRSI PAMDRSLERS MLLELALTAM  300
DELVKMAQMG VPLWTSSPET GRETLNYEHY EQVFPRCNGL KPGNFVPEAT RETTMVIINS  360
LALVETLMDA ARWADMFPGM IARATTTDII SAGLGGSRNG ALQLMHAELQ VLSPLVPIRE  420
VHFLRFCKQL ADGAWAVVDV SIDGIRENPS PSGLSPKCRR LPSGCVVEDM PNGYSKRSLL  480
IPSTLRSQSL ASSVFQSVSH VVSPPSKRAV FVVFMRCRVP LYPCRRILLH HLLFVCCVTE  540
AFLFPQVTWV EHAEYDETAV HQLYRSLLRS GMALGAQRWL ATLQRQCECL AILMSSVPSR  600
DQTAISAAGR RSMLKLAQRM TDNFCAGVCA SSARKWSRLA NVGSVGEDVR VMSRQSVDDP  660
GEPPGVVLSA ATSVWLPVTP TRLFDFLRDE SLRSRWDILS NGGPMQEMAH IAKGQDHGNA  720
VSLLSASAVN ANQNGMLILQ ETCTDASGSL VVYAPVDVPA MQLVMNGGDS AYVALLPSGF  780
AVMPDGPAAL AGADGKIGGG SLLTVAFQIL VNSLPTAKLT VESVETVNNL ISCTVQKIRG  840
ALGCCES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.2	1e-171	HD-ZIP family protein