PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA46683.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ERF
Protein Properties Length: 252aa    MW: 26787.3 Da    PI: 9.6068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA46683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-213281255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  PKA46683.1 32 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 81
                58*******.**********8...557*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MAPREKGTGG GRSGGGGGVG VELGGSVGKE MHFRGVRKRP WGRYAAEIRD PGKKSRVWLG  60
TFDTAEEAAR AYDAAAREFR GPKAKTNFPC TDVSQIPIPV VEAAAAAAAA AGSPSSQSST  120
VESSSREAVS VLPPLATPLP PLDFDLFHRG APRFPFQHFP PPAAMAQPFF LFDPFVRSDK  180
AATLAATVAV AGHHRLALDR PMILREYRAP VHSGVQSDSD SSSVVDLQPP TLQSRRRCID  240
LDLNLPPPTE IA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1918GGGRSGGGGG
21019GGGRSGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-24ERF family protein