PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46777.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

FAR1

Protein Properties

Length: 672aa MW: 77477.2 Da PI: 7.7718

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46777.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.2e-22	86	176	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA ++GF +r+++s++++r+g ++++fvC keg+++++ ++ ++k++r+r + r gC a+++v ++ ++w vtkl+l+H+H + PKA46777.1 86 FYNAYALRLGFGIRVARSRSERRKGveVLVMKRFVCLKEGHHKKKATElSTKKKRKRLSIRDGCPAMMEVVRRGPDRWIVTKLVLDHTHVV 176 9************9999886665216789********999998899999********************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MDYSSSEDDD LIEDYMDLEE DEMTSDVEQQ TREVTSSLHF FNQQDNSVAS VDHPLSSELL 60 AAEVDMKSQD PHLGMEFESD STARMFYNAY ALRLGFGIRV ARSRSERRKG VEVLVMKRFV 120 CLKEGHHKKK ATELSTKKKR KRLSIRDGCP AMMEVVRRGP DRWIVTKLVL DHTHVVVSPD 180 KVREIQLNQL SGKDCEHDNY LREIRQKIFG EGDAQGLLEY FKKMQAENSG FFYAMQVDSR 240 NRLANIFWAD ARSRITHKYF GDAVTFDTTY KKNENMIPFA AFTGVNHHGQ PVNFGCALVI 300 DKTESSFSWL FETWLTSMSG RHPISLTTDQ GKAVGVAVAK AFPNTCHRIC KWRIFSRCKK 360 KLSDAYSRYP ALAEDIKKCV CECETTESFE AYWKLILDKY NLRENAWLQL VYSIRHKWVP 420 AFLKDSFFAE LQPTQRLESV NTFFRRHFDT KISLQVLISK FDKAMDNRHE KELQEDFGAA 480 MHSHLVLKTG SHMEKQAASI YTRTVFERFQ LELVEAFDHY AVKFQDGTIS KYTVERDGDT 540 HSRHIVAFDA SEKKAVCSCY KFESSGILCR HVLGVFLVAG LILLPEHYIL KRWTKKAKSG 600 IDLDARDVET SSYCQNSPIL RYNELFRHAL KIAEKGAASL ETYKFAKDML QKAFSEIAGV 660 EEDVLKHGHH HS

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MDYSSSEDDD LIEDYMDLEE DEMTSDVEQQ TREVTSSLHF FNQQDNSVAS VDHPLSSELL  60
AAEVDMKSQD PHLGMEFESD STARMFYNAY ALRLGFGIRV ARSRSERRKG VEVLVMKRFV  120
CLKEGHHKKK ATELSTKKKR KRLSIRDGCP AMMEVVRRGP DRWIVTKLVL DHTHVVVSPD  180
KVREIQLNQL SGKDCEHDNY LREIRQKIFG EGDAQGLLEY FKKMQAENSG FFYAMQVDSR  240
NRLANIFWAD ARSRITHKYF GDAVTFDTTY KKNENMIPFA AFTGVNHHGQ PVNFGCALVI  300
DKTESSFSWL FETWLTSMSG RHPISLTTDQ GKAVGVAVAK AFPNTCHRIC KWRIFSRCKK  360
KLSDAYSRYP ALAEDIKKCV CECETTESFE AYWKLILDKY NLRENAWLQL VYSIRHKWVP  420
AFLKDSFFAE LQPTQRLESV NTFFRRHFDT KISLQVLISK FDKAMDNRHE KELQEDFGAA  480
MHSHLVLKTG SHMEKQAASI YTRTVFERFQ LELVEAFDHY AVKFQDGTIS KYTVERDGDT  540
HSRHIVAFDA SEKKAVCSCY KFESSGILCR HVLGVFLVAG LILLPEHYIL KRWTKKAKSG  600
IDLDARDVET SSYCQNSPIL RYNELFRHAL KIAEKGAASL ETYKFAKDML QKAFSEIAGV  660
EEDVLKHGHH HS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	142	KKKATELSTKKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-155	FAR1 family protein