PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46844.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 254aa MW: 29355.2 Da PI: 9.4938

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.3	3.1e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifss+g+lyey+ PKA46844.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIIFSSRGRLYEYA 58 79***********************************************8 PP
2	K-box	112.8	3.4e-37	76	172	3	99
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +s+ s +ea+++++qqe++kL+++i nLq+++R+l+Ge L++++ k+L+qLe++Lek+++kiR+kKnell+++ie++qk+e elq++n +Lr+k++ PKA46844.1 76 NSNAGSISEANSQYYQQEASKLRQQITNLQNSNRNLMGEALSNMNAKDLKQLETRLEKGISKIRAKKNELLYAEIEYMQKREIELQNDNAYLRNKIA 172 34444599***************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MGRGRVEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEIALIIFSS RGRLYEYANH 60 SVKGTIERYK KASSDNSNAG SISEANSQYY QQEASKLRQQ ITNLQNSNRN LMGEALSNMN 120 AKDLKQLETR LEKGISKIRA KKNELLYAEI EYMQKREIEL QNDNAYLRNK IADNESIQQH 180 QHHMNLLPST SNEYDILPPF DISRNFLQVN LMDPSHQYSH QQQTALQLGY TITVSTICSF 240 TAILLSFHAK FYTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-107	MIKC_MADS family protein