PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47006.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 403aa MW: 46381.6 Da PI: 7.3241

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.9	5.6e-23	102	196	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++++v++Li+a+++++++ +++ +kk++W+ +sk+++e+g+ +sp+qC++k+++lnkryk+++++ +++ +++++++ +++d ++ PKA47006.1 102 KWKDEMVRLLITAVSYLGDDECKSSgkrkvsmiQKKGKWKLISKVLAEKGCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPALLDLMD 196 7************888777765555778899********************************************6699999999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MIPGASYGVL DLQGSMHIHH FQNPNSSFHH HHQHGDSLVH PPMHDVFPQK INHMVDCEKK 60 GDHCKNSTSD DEDEPSFNND DGVSNQSEAG KGKKGSPWQR MKWKDEMVRL LITAVSYLGD 120 DECKSSGKRK VSMIQKKGKW KLISKVLAEK GCYVSPQQCE DKFNDLNKRY KRLTDILGRG 180 TSCKVVENPA LLDLMDHIPD KAKEDVRKIL SSKHLFYEEM CSYHNGNRLN LPANPALQRS 240 LQLALRSKDD HDMKRSALED IEEDDQGDTD DGFNDGEDNN MLYADIGRSC VTKRMKIGLG 300 CEEIGFSNPS HSMVMAQEHS EGPKASWVQI QLMRSHSIQV EEQMLHIQSQ MLELGKQRFK 360 WQRFRKKKDR ELDKMKMENE RMKLDNERLA LELKRKQLEL GLN

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MIPGASYGVL DLQGSMHIHH FQNPNSSFHH HHQHGDSLVH PPMHDVFPQK INHMVDCEKK  60
GDHCKNSTSD DEDEPSFNND DGVSNQSEAG KGKKGSPWQR MKWKDEMVRL LITAVSYLGD  120
DECKSSGKRK VSMIQKKGKW KLISKVLAEK GCYVSPQQCE DKFNDLNKRY KRLTDILGRG  180
TSCKVVENPA LLDLMDHIPD KAKEDVRKIL SSKHLFYEEM CSYHNGNRLN LPANPALQRS  240
LQLALRSKDD HDMKRSALED IEEDDQGDTD DGFNDGEDNN MLYADIGRSC VTKRMKIGLG  300
CEEIGFSNPS HSMVMAQEHS EGPKASWVQI QLMRSHSIQV EEQMLHIQSQ MLELGKQRFK  360
WQRFRKKKDR ELDKMKMENE RMKLDNERLA LELKRKQLEL GLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	367	KQRFKWQRFRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-113	Trihelix family protein