PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47072.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 334aa MW: 36724.6 Da PI: 11.2695

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47072.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.8	5.1e-17	78	168	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W++ + aLi+a e+ +l+rg+lk+++W+ev++++ + r+ +qCk++++ l+k+yk k+ ++ + +ss++p+f++l+a PKA47072.1 78 CWSEGATSALIDAWGERFIDLNRGSLKQKQWQEVADAVnsrdDYLKPPRTDVQCKNRIDTLKKKYKLQKAKIAGGGPSVSSSWPFFRRLDA 168 7***********************************86444455599********************999**********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MDDDDDVPSR SRSRSRSPSP LPPPISVVHP SSSPPPKGLP FDSVTVAAAG PQSHPQNLTL 60 AVSIPHPPAS GNGGREDCWS EGATSALIDA WGERFIDLNR GSLKQKQWQE VADAVNSRDD 120 YLKPPRTDVQ CKNRIDTLKK KYKLQKAKIA GGGPSVSSSW PFFRRLDALL GPAISKQPPP 180 TAVAAAARSR FPQKQRTNLP AKRKASQPPA SPSSTSDSLP PSAAAAAAAN WRRRRLPAAG 240 LKELTRALLK FGEIYQRVEC SKLQQAMEME RRRMGFTKEL EMQRLQFFMK TQMELSKLKR 300 YRRSAAGTGA GVHNHHHSRR RHQQTPGNGD GQRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	236	WRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.2	4e-44	Trihelix family protein