PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47077.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 390aa MW: 42144.6 Da PI: 6.3781

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.2	5.3e-07	226	251	5	30
HHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 5 hnerErrRRdriNsafeeLrellPka 30 h+++Er RR++i +++ +L+el+P++ PKA47077.1 226 HSIAERLRREKIADRMKNLQELVPNS 251 99**********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MDNFISSFLS TPSWSDMNAS SNGSWVGNIS SQTESYVESY SEDDKNPAIS MISSGHVMGN 60 LSAEDLNIAH DSSSTMFTDS FKYDATKGLF LGKNLSQDEQ RNHHQHSSHG VEAHEGNFFV 120 TSTIASNPIA ASYRLESISG DSGDPAMFAQ PLGESNSISS VPTFWPPSYS AISSYAGQEK 180 GESFSFHGKA IGSDFSRKMT SSNALGCNGT AKPRTRARRG QATDPHSIAE RLRREKIADR 240 MKNLQELVPN SNKVLSMSRL GAAGAVVPLI TDVQAEGAGS LHLSPHTRRE DLSGSQDNSA 300 FEQEVLKLME SNVTAAMQFL QNKGLCLMPI ALASAISSQK RSPAAAPPDR RKLRENATNL 360 LGNEVNSCDG VVKQEEVTKS MDNRKEPGHF

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MDNFISSFLS TPSWSDMNAS SNGSWVGNIS SQTESYVESY SEDDKNPAIS MISSGHVMGN  60
LSAEDLNIAH DSSSTMFTDS FKYDATKGLF LGKNLSQDEQ RNHHQHSSHG VEAHEGNFFV  120
TSTIASNPIA ASYRLESISG DSGDPAMFAQ PLGESNSISS VPTFWPPSYS AISSYAGQEK  180
GESFSFHGKA IGSDFSRKMT SSNALGCNGT AKPRTRARRG QATDPHSIAE RLRREKIADR  240
MKNLQELVPN SNKVLSMSRL GAAGAVVPLI TDVQAEGAGS LHLSPHTRRE DLSGSQDNSA  300
FEQEVLKLME SNVTAAMQFL QNKGLCLMPI ALASAISSQK RSPAAAPPDR RKLRENATNL  360
LGNEVNSCDG VVKQEEVTKS MDNRKEPGHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	8e-42	bHLH family protein