PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47147.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 253aa MW: 28811.2 Da PI: 10.0336

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47147.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82	4e-26	32	80	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n+ rqvtfskRrng+lKKA EL +LCdaev +i+fsstg+ly++ PKA47147.1 32 RIDNSATRQVTFSKRRNGLLKKARELAILCDAEVGLIVFSSTGRLYDFT 80 8**********************************************96 PP
2	K-box	84	3.3e-28	100	192	7	98
K-box 7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +s +++++ + +q+e+ L+++++nLq+++R+l+Ge++++Ls keLq+Le+qLe+sl+ iR kK+e+l ++++el +k + +++en++L+k + PKA47147.1 100 VSpNANSEIKVWQKEAVSLRQQLHNLQENHRQLMGENISQLSAKELQHLENQLETSLRAIRLKKEEVLSDEVQELIHKVNLVHQENTELHKTI 192 445788999*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence
MKGISDLLLA LHCRSRGRKG RGMGRGKIAI RRIDNSATRQ VTFSKRRNGL LKKARELAIL 60 CDAEVGLIVF SSTGRLYDFT NTSMKSVIER YNKAKEDHGV SPNANSEIKV WQKEAVSLRQ 120 QLHNLQENHR QLMGENISQL SAKELQHLEN QLETSLRAIR LKKEEVLSDE VQELIHKVNL 180 VHQENTELHK TINISTKENM DLCKKLRGQA GVSNSTGLLR PCSEDLILFE ICQPKKQTRV 240 VETDKLNLEL CLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	26	RGRKGRGMGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-77	MIKC_MADS family protein