PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47169.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 265aa MW: 29226.2 Da PI: 10.5305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47169.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.5	1.8e-06	113	157	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+r+ ++++ L +l ++ +K +K ++++ A +++L PKA47169.1 113 HMMRERQRRERLSQSYADLHYVLSPR-----TKADKNSVVQSAATMLRDL 157 889******************99998.....8999999999999888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MDHDHFLAGS LDDHFFWPLS PEPFHDLINA VSEAAVPPPA PAGPPPPTVW RSAFSAYTRP 60 PPQEEQQQRG RQNVHRRLME LLRWVHRGKQ EGRACGGGGG GGGPGGGGRE FRHMMRERQR 120 RERLSQSYAD LHYVLSPRTK ADKNSVVQSA ATMLRDLKGV KERLQRRNEE LVSSIRPVAG 180 ATPPERAPAG DKTDRFEVRV ESQDSSIDSM ISALRCLQGT GVKTKAIQLK IAGGGGLIVV 240 VTTERDERNS ASKVKGMLEK MLTVK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-07	bHLH family protein