PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47227.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 197aa MW: 22786.6 Da PI: 6.8026

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.6	2.4e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+ ar g++Rt+k+c++rw++yl PKA47227.1 15 KGPWTMEEDLILINYIANHGEGVWNNLARSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	68	111	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ +++ ++G++ W++Ia+ ++ gRt++++k++w++ PKA47227.1 68 RGNITPEEQLLIMELHSRWGNR-WSKIAKQLP-GRTDNEIKNYWRT 111 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MDKRISSSEE ADVRKGPWTM EEDLILINYI ANHGEGVWNN LARSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHSRWGNRW SKIAKQLPGR TDNEIKNYWR TRIQKKVKNE 120 EPMLDFSNPM ITNHEVGSSH TSIMDQEAAT MTHESSYYSN LYHGGTNPTA YAPEFIAGDP 180 GEIIWSVDDF WSMQSLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	5e-79	MYB family protein