PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA47270.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ARF
Protein Properties Length: 330aa    MW: 37088.6 Da    PI: 8.0207
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA47270.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.1e-23111211198
                 EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f+k+lt sd++++g +++ +++a+++     ++++  +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF   + +++el+v
  PKA47270.1 111 FCKILTASDTSTHGGFSVLRRHANDClppldMSQPVPTQELSAKDLHGLEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVAGDAFVFL--RGENGELRV 207
                 99*********************999****9666667779************************************************..449999999 PP

                 EEE- CS
          B3  95 kvfr 98 
                 +v r
  PKA47270.1 208 GVKR 211
                 9866 PP
2Auxin_resp103.72.2e-34237316183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t++ F+v+Y+Pr+  s+F+v v+k+++a+++ +s+GmRfkm+fe+ed++e+r++Gt+vgv dl++ +W++SkWr+Lk
  PKA47270.1 237 ASHAVTTQTFFTVCYKPRT--SQFIVGVNKYLEAVSNGFSLGMRFKMKFEGEDVPEKRYTGTIVGVGDLSS-QWEGSKWRQLK 316
                 789***************6..9**********************************************777.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MAGDDLYEEL WRACAGPLVE IPRSGERVYY FPQGHMEQLE ASTNQEMDQR IPLFNLPSKI  60
LCCVLNIELR AEPETDEVYA QITLLPEADQ SELKTPDPCL TEPKRSMVHS FCKILTASDT  120
STHGGFSVLR RHANDCLPPL DMSQPVPTQE LSAKDLHGLE WRFKHIYRGQ PRRHLLTTGW  180
STFVTSKKLV AGDAFVFLRG ENGELRVGVK RLARQKSSIP SSVISSRSMH LGVLATASHA  240
VTTQTFFTVC YKPRTSQFIV GVNKYLEAVS NGFSLGMRFK MKFEGEDVPE KRYTGTIVGV  300
GDLSSQWEGS KWRQLKVNLV LLSIQICLHA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-170ARF family protein