PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47303.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 396aa MW: 42747.9 Da PI: 8.4696

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	323	368	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av+YIk+Lq PKA47303.1 323 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 368 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MYGSPSAAAT KDLNFPFPTA TAAFGHRKEE SDLERQQQMS SGLLRYRSAP STLFGEVCED 60 FLPVRPSSPD TESMFARFLA APDLREDPRN RTSGDGVSGV QRNPQLNSTA PPPTSTTDRS 120 CGFSPATNML YPSPQQPPMA SGANLIRQSS SPAGLFSPLN VDNGYGFMRG MAACVTNGMG 180 PEAGMAAAVK AAGRLKGQIS FSSRQNSLSQ ISELGSDGIS GGDGSPEESS NGRGFIPAGY 240 AITSWEGPGG LKRAREVMVS AGLNQTEYQS GELRDHHVPG LTHQFSLPKT SSEMAALEKF 300 LQFQDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTSDMLDLA 360 VDYIKDLQRQ VKSLTESRAM CSCSASKQQS YPSQEG

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MYGSPSAAAT KDLNFPFPTA TAAFGHRKEE SDLERQQQMS SGLLRYRSAP STLFGEVCED  60
FLPVRPSSPD TESMFARFLA APDLREDPRN RTSGDGVSGV QRNPQLNSTA PPPTSTTDRS  120
CGFSPATNML YPSPQQPPMA SGANLIRQSS SPAGLFSPLN VDNGYGFMRG MAACVTNGMG  180
PEAGMAAAVK AAGRLKGQIS FSSRQNSLSQ ISELGSDGIS GGDGSPEESS NGRGFIPAGY  240
AITSWEGPGG LKRAREVMVS AGLNQTEYQS GELRDHHVPG LTHQFSLPKT SSEMAALEKF  300
LQFQDSVPCK IRAKRGCATH PRSIAERVRR TRISERMRKL QELVPNMDKQ TNTSDMLDLA  360
VDYIKDLQRQ VKSLTESRAM CSCSASKQQS YPSQEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	5e-64	bHLH family protein