PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47308.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 354aa MW: 40433.5 Da PI: 5.2638

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.2	4.4e-23	81	180	1	86
trihelix 1 rWtkqevlaLiearr...........emeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt++ v+++i+++ e + +kk++W++vsk m+e+g+++sp+qC++k+++lnkryk+++e+ +++ t+ +++ PKA47308.1 81 KWTDEVVRLMIAVVAfvndegtpdpvE--------AaarrrsgavlQKKGKWKAVSKLMMEKGCRISPQQCEDKFNDLNKRYKRLNEILGRGtTCMVVE 171 7************666666555442........03333345566******************************************77* PP trihelix 78 tcpyfdqle 86 + +++d+++ PKA47308.1 172 NPSLLDSMT 180 ****997 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MMDNSGISSS SLLRRSSAGV FDLDPSIHHQ YQSNHLADHL HPPLVPCASG GVEDDDSAGN 60 EENRVGSGDK AKQGSPWLRM KWTDEVVRLM IAVVAFVNDE GTPDPVEAAA RRRSGAVLQK 120 KGKWKAVSKL MMEKGCRISP QQCEDKFNDL NKRYKRLNEI LGRGTTCMVV ENPSLLDSMT 180 HVSAKMKEDV KRIFNSKHLF YREMCAYHNG QKIPGLLEMR GENLPNLGSL QEGTDNDDDD 240 DDDDGGNDDD EKSEDEIGGM GFNNFHAEID LVFHDQTKTA SEKLEWFQGR ELQLKQEKLA 300 ILAEGFELEK RSFKWQRFRN KKDREMEKMR LENERLMLES ERMILEVKRK ELEL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MMDNSGISSS SLLRRSSAGV FDLDPSIHHQ YQSNHLADHL HPPLVPCASG GVEDDDSAGN  60
EENRVGSGDK AKQGSPWLRM KWTDEVVRLM IAVVAFVNDE GTPDPVEAAA RRRSGAVLQK  120
KGKWKAVSKL MMEKGCRISP QQCEDKFNDL NKRYKRLNEI LGRGTTCMVV ENPSLLDSMT  180
HVSAKMKEDV KRIFNSKHLF YREMCAYHNG QKIPGLLEMR GENLPNLGSL QEGTDNDDDD  240
DDDDGGNDDD EKSEDEIGGM GFNNFHAEID LVFHDQTKTA SEKLEWFQGR ELQLKQEKLA  300
ILAEGFELEK RSFKWQRFRN KKDREMEKMR LENERLMLES ERMILEVKRK ELEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-71	Trihelix family protein