PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47352.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 1003aa MW: 111884 Da PI: 7.5881

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.3	1.2e-39	144	221	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe hsk++++lv +++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ PKA47352.1 144 MCQVDDCKADLSNAKDYHRRHKVCELHSKTSNALVCKQMQRFCQQCSRFHPLMEFDEGKRSCRRRLAGHNRRRRKTQP 221 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MEGEMDVGLA PPLFLQQSQL FSAPAMARKR DLSWACPGVL PNVHQQQQSQ RWLMGSGLDL 60 SGDSSSWNPR MWDWDSVRFT AKPSAGECND AEQRRDDGRK ALVQESENLS LKLGGGSYAV 120 EEPVVRPFKR VRSGSPSNAV TYPMCQVDDC KADLSNAKDY HRRHKVCELH SKTSNALVCK 180 QMQRFCQQCS RFHPLMEFDE GKRSCRRRLA GHNRRRRKTQ PEDARSSILV PRSQDGKTNG 240 SMDIVNLLAI LTRLQGYSTE KHAVMSSPLD KDRLIFLLNK ISSSQSANVS SKSNAQGVFD 300 INVSQTPQQH AQEEPIKEIG NRSVPSTMDL LAVLSAALAS SKPNALANIK CCEKPAQIAT 360 PRFPLQLFGS EDDSPPKLGY ENKYPSSESS NPIEDRSPSC SPPMEKKLFP LHSASEKKYE 420 GMLISREDHA TAEMSTTSGW VTPLELFMNS SSFGSDRSPS TSTCEAQDQT GQIIFKLFDK 480 DPSNFPGTLR AEVLSWLSHR PSEIESYIRP GCVVLTVYLC MTSTAWDELE KEFLQRVCSL 540 VRCSVSGFWR SGRFLVRIGR QLASHKDGKI HVCNSWKTLG SPELTSVSPI AIVSGKAASL 600 VLKGRNLTAP GTKIHCTYKG GYSSKEVLGL TYPGTIYDHS SCQSFIFPKE LPFAYGRLFV 660 EVENGFKGNS FPIIIADAAI CQELRTLESE LEDVGGMDAI SHYQYQEKGR PESREDALYF 720 LNELGWLFQR KNHYPDPSFT DFSTSRFEYL FTFSVERDWS ALARMLLDML VERAYSSDSI 780 LEESLEMLVD LQLLTRALKR KCRKMVELLL GYSIKNNLTK DSEVYLFTPN SICPGGLTPL 840 HLAASMQDAE EMVDALTSDP QEIGLNCWDC LMDNGGWSPS MYATSRNNHS YNKLIARKLA 900 DKKNGQVSVV IWHEEIPMDK PFVAAESPGC PSAMSLSSCA QCALANSRLA MVNCSRRLLH 960 RPYVHSVLAI AAVCVCVCLF LRGPPWVGSV APFEWKNLEF GPK

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MEGEMDVGLA PPLFLQQSQL FSAPAMARKR DLSWACPGVL PNVHQQQQSQ RWLMGSGLDL  60
SGDSSSWNPR MWDWDSVRFT AKPSAGECND AEQRRDDGRK ALVQESENLS LKLGGGSYAV  120
EEPVVRPFKR VRSGSPSNAV TYPMCQVDDC KADLSNAKDY HRRHKVCELH SKTSNALVCK  180
QMQRFCQQCS RFHPLMEFDE GKRSCRRRLA GHNRRRRKTQ PEDARSSILV PRSQDGKTNG  240
SMDIVNLLAI LTRLQGYSTE KHAVMSSPLD KDRLIFLLNK ISSSQSANVS SKSNAQGVFD  300
INVSQTPQQH AQEEPIKEIG NRSVPSTMDL LAVLSAALAS SKPNALANIK CCEKPAQIAT  360
PRFPLQLFGS EDDSPPKLGY ENKYPSSESS NPIEDRSPSC SPPMEKKLFP LHSASEKKYE  420
GMLISREDHA TAEMSTTSGW VTPLELFMNS SSFGSDRSPS TSTCEAQDQT GQIIFKLFDK  480
DPSNFPGTLR AEVLSWLSHR PSEIESYIRP GCVVLTVYLC MTSTAWDELE KEFLQRVCSL  540
VRCSVSGFWR SGRFLVRIGR QLASHKDGKI HVCNSWKTLG SPELTSVSPI AIVSGKAASL  600
VLKGRNLTAP GTKIHCTYKG GYSSKEVLGL TYPGTIYDHS SCQSFIFPKE LPFAYGRLFV  660
EVENGFKGNS FPIIIADAAI CQELRTLESE LEDVGGMDAI SHYQYQEKGR PESREDALYF  720
LNELGWLFQR KNHYPDPSFT DFSTSRFEYL FTFSVERDWS ALARMLLDML VERAYSSDSI  780
LEESLEMLVD LQLLTRALKR KCRKMVELLL GYSIKNNLTK DSEVYLFTPN SICPGGLTPL  840
HLAASMQDAE EMVDALTSDP QEIGLNCWDC LMDNGGWSPS MYATSRNNHS YNKLIARKLA  900
DKKNGQVSVV IWHEEIPMDK PFVAAESPGC PSAMSLSSCA QCALANSRLA MVNCSRRLLH  960
RPYVHSVLAI AAVCVCVCLF LRGPPWVGSV APFEWKNLEF GPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein