PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA47414.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 365aa    MW: 39777.6 Da    PI: 6.0571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA47414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-10205252455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PKA47414.1 205 SHSLAERVRRQKISQRMKLLQDLVPGC----NKITGKALMLDEIINYVQSLQ 252
                 8**************************....999*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MNCGSPALDQ VLSSCLHSLN SEQSIDPFSS VVLQSHVPVM PAAAVISGKI SDFAENRLNS  60
MPGHCLMPVL TESGLAERAA MCSLFNAGSY GAFSGQFAIS ETETFSQFFS SPTGDEELGS  120
GLESSSVTDP GWSPGEKKGK KRKAVVKNRG KGNDLKVKKC LSGETKEENE QKGDKEHGSD  180
NASKAPEPPK DYIHVRARRG QATDSHSLAE RVRRQKISQR MKLLQDLVPG CNKITGKALM  240
LDEIINYVQS LQRQVEFLSM KLATVNLWPD FYCDNLIPKD SPMIQATASF ATCPIGQQSK  300
EGNSLHFCVN QVDASQQENL WDDELHSIIQ MSFAQNQETE ATSQRFHDKA AADASSPAKE  360
GSKDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-52bHLH family protein