PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47678.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 408aa MW: 44216 Da PI: 6.1957

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47678.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	246	291	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L PKA47678.1 246 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVGYIKDL 291 799*********************6.....4**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MEDIISPSSS CSPPPPLAAH LSVRPISPPS TLQFRLQCLI HSRPEWWTYV IFWRASPDLT 60 ALAFGDGHFR GNRDADRRRS ETAADGDDAE WFYVVSLTRS FASAEATVPA RAYGSLAPVW 120 LAGAHALQTC GCDRSREAQL HGIETLVCVP VAGGVVELGS GDLIGENWVL VQQTKAVLCA 180 PDDDPAKEIA AAVAAAPGGG GPFAGISSSV DSEHSDSEGG QMVERRRPRK RGRKPGTFGR 240 ETPPVNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL LADAVGYIKD LLAKVDELEA 300 EVKRSRKEIV VEQNIAGGRT PDSRPATMEA DVKLFGFESA IIRVQSQNLS HPPAKLMAAL 360 RELDLAVHQA SISGVNEMVI QDAVVGVPAD LQDEDKLRSA LLAQLERC

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MEDIISPSSS CSPPPPLAAH LSVRPISPPS TLQFRLQCLI HSRPEWWTYV IFWRASPDLT  60
ALAFGDGHFR GNRDADRRRS ETAADGDDAE WFYVVSLTRS FASAEATVPA RAYGSLAPVW  120
LAGAHALQTC GCDRSREAQL HGIETLVCVP VAGGVVELGS GDLIGENWVL VQQTKAVLCA  180
PDDDPAKEIA AAVAAAPGGG GPFAGISSSV DSEHSDSEGG QMVERRRPRK RGRKPGTFGR  240
ETPPVNHVEA ERQRREKLNH RFYALRSVVP NVSRMDKASL LADAVGYIKD LLAKVDELEA  300
EVKRSRKEIV VEQNIAGGRT PDSRPATMEA DVKLFGFESA IIRVQSQNLS HPPAKLMAAL  360
RELDLAVHQA SISGVNEMVI QDAVVGVPAD LQDEDKLRSA LLAQLERC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	230	RRRPRK
2	226	234	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	1e-67	bHLH family protein