PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47803.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 509aa MW: 58328.1 Da PI: 9.8719

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47803.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	458	474	5	21
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 +C +sF ++s+L+ H + PKA47803.1 458 YCRYSFVHNSLLRAHVK 474 9**************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence
MRLQLFHRRF PLSINAARRS SLAALCSLPI PNSEEHERSA GPGESLSLRV ERLRGGEPAA 60 SAIRSWMGDG FAVHRGEVFH AINRLRKLGR NKRALEIMEW IMRERPYKLK ALDYAYLLEF 120 TAKIHGISQG ESLFLRIPHE FQNELLYNNL VMACLDKGLV SLSLNYMRKM RELSLPISPY 180 VYNRLIILHS SSGQRKTIPK ILRQMKADCV LPHVSTYNIL LKIEADEHNI EGLSKVFNEM 240 KKMEVKPSET TYGILAIAHA VARLYTVSEM FVEEIEKIKT GKNWSTLDIL LILYGYLGKQ 300 SELERTWKLV KSLPHVRAKS FLLAIESFGR MGCMDRAEEI WAEIKSSKST KHFNSMISVY 360 CRSRNLDKAS DLFEEMQANG CKPNAITYRN LALGCLKSGL IKEGLRTLDL GEEKGVSFQV 420 RRSTPWLETA HMLLEAFADI GDLRHAKILF KEFKETKYCR YSFVHNSLLR AHVKAKVCDP 480 ELLRKMILAG ARPDAETYSL MRLAEEFKV

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence

MRLQLFHRRF PLSINAARRS SLAALCSLPI PNSEEHERSA GPGESLSLRV ERLRGGEPAA  60
SAIRSWMGDG FAVHRGEVFH AINRLRKLGR NKRALEIMEW IMRERPYKLK ALDYAYLLEF  120
TAKIHGISQG ESLFLRIPHE FQNELLYNNL VMACLDKGLV SLSLNYMRKM RELSLPISPY  180
VYNRLIILHS SSGQRKTIPK ILRQMKADCV LPHVSTYNIL LKIEADEHNI EGLSKVFNEM  240
KKMEVKPSET TYGILAIAHA VARLYTVSEM FVEEIEKIKT GKNWSTLDIL LILYGYLGKQ  300
SELERTWKLV KSLPHVRAKS FLLAIESFGR MGCMDRAEEI WAEIKSSKST KHFNSMISVY  360
CRSRNLDKAS DLFEEMQANG CKPNAITYRN LALGCLKSGL IKEGLRTLDL GEEKGVSFQV  420
RRSTPWLETA HMLLEAFADI GDLRHAKILF KEFKETKYCR YSFVHNSLLR AHVKAKVCDP  480
ELLRKMILAG ARPDAETYSL MRLAEEFKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64100.2	4e-14	NAC family protein