PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47813.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 228aa MW: 23996.2 Da PI: 5.4574

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47813.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00012	62	80	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cg+ F+++ L H+r PKA47813.1 62 CYVCGRQFPTQKALFGHMR 80 99****************8 PP
2	zf-C2H2	14.2	0.00013	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C ++F+++ L H +H PKA47813.1 122 YVCGECRRVFPSRQALGGHRASH 144 9***************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MSAPSGDPPK PPPSASSGAG GQRGKRPLVL PNSSSSSTDD DRNGNNTGGP SAAPAAPPLP 60 ACYVCGRQFP TQKALFGHMR CHPEREWRGV RPLPEGEGSS APAREEQEEE EGSGGDHQGE 120 EYVCGECRRV FPSRQALGGH RASHRGVMGC SARAKEATAA AAAAAEETTT GGRLLRDRGV 180 SIREQGGSSS AVGRRGLPVD LNLPPPPEEE EEEEKEEEGQ KEVKEGRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	4e-19	C2H2 family protein