PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47931.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 727aa MW: 80856.6 Da PI: 7.0025

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47931.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.7e-08	51	93	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I +++ + +q++++++ + PKA47931.1 51 AWTRQEQENFFNALRQVGKN-FEKITCRVQ-SKNKNQVRHYYYRL 93 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MNPPSQVALR SQAPLSESSP IYDTNNSFQM PSSMAMDDRK PGPKRTRQWA AWTRQEQENF 60 FNALRQVGKN FEKITCRVQS KNKNQVRHYY YRLVRRMNKL LSPGFCLDAK NSKDTNAAML 120 RWWSLLEKYS CTPSKLHRKP RRFKIFVEAL ENQLLRDRNK ARRKRQCQGQ GRLETSSATS 180 LLSRLSEHDI CGMKALDADA ENIPKGASLK RTMNSNVNFS KGIFSALKAT GQKQRAGLLE 240 SAAYKRWEKA AIAGVSLVAD AAEQLERVTN RVCPIPTGET VMLTRDKLKL QLFPVNDDTR 300 RRLERDGHNP FLELTLSARK RISSVLEHLN RKWGITNVAS GELILLPYNP EQDDIAKCQR 360 WSIKDANTTA ADVLAAIGSP LFRLRYGLLS EAVSTVGSSE LPVAFGFEEN IHRDFDANDR 420 MAIDSDTSKT TRPNSTDMSC ADVPSSAICG TVEPVTKTKD LPMSFAVSYS GTIEKTEVFE 480 TSKKNSGSNF LEADPAVKSS SALLDGEWAD SLTNVSVGDL LLEASEVSSP EQNVPCMQQT 540 PISCDSFDAA VAAHSSYHRF SSLESQPPIS SIWNAEETCD EFSFRKAPAL KSNGLNLTTH 600 SSERSLRDDI HMNAANSMDY LEDPKEPGPS HPSGDEPESA NDSTLHNKHD ASRDVSLTDF 660 YWPDSLGSLG QLDLDSPFSK FQQDLCFADS TSQSSFNRML SGSLDIFHNG SALGSDKKDD 720 KLIQIVD

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MNPPSQVALR SQAPLSESSP IYDTNNSFQM PSSMAMDDRK PGPKRTRQWA AWTRQEQENF  60
FNALRQVGKN FEKITCRVQS KNKNQVRHYY YRLVRRMNKL LSPGFCLDAK NSKDTNAAML  120
RWWSLLEKYS CTPSKLHRKP RRFKIFVEAL ENQLLRDRNK ARRKRQCQGQ GRLETSSATS  180
LLSRLSEHDI CGMKALDADA ENIPKGASLK RTMNSNVNFS KGIFSALKAT GQKQRAGLLE  240
SAAYKRWEKA AIAGVSLVAD AAEQLERVTN RVCPIPTGET VMLTRDKLKL QLFPVNDDTR  300
RRLERDGHNP FLELTLSARK RISSVLEHLN RKWGITNVAS GELILLPYNP EQDDIAKCQR  360
WSIKDANTTA ADVLAAIGSP LFRLRYGLLS EAVSTVGSSE LPVAFGFEEN IHRDFDANDR  420
MAIDSDTSKT TRPNSTDMSC ADVPSSAICG TVEPVTKTKD LPMSFAVSYS GTIEKTEVFE  480
TSKKNSGSNF LEADPAVKSS SALLDGEWAD SLTNVSVGDL LLEASEVSSP EQNVPCMQQT  540
PISCDSFDAA VAAHSSYHRF SSLESQPPIS SIWNAEETCD EFSFRKAPAL KSNGLNLTTH  600
SSERSLRDDI HMNAANSMDY LEDPKEPGPS HPSGDEPESA NDSTLHNKHD ASRDVSLTDF  660
YWPDSLGSLG QLDLDSPFSK FQQDLCFADS TSQSSFNRML SGSLDIFHNG SALGSDKKDD  720
KLIQIVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	1e-144	MYB_related family protein